1xp8

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(New page: 200px<br /><applet load="1xp8" size="450" color="white" frame="true" align="right" spinBox="true" caption="1xp8, resolution 2.50&Aring;" /> '''"Deinococcus radiodu...)
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[[Image:1xp8.jpg|left|200px]]<br /><applet load="1xp8" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1xp8, resolution 2.50&Aring;" />
 
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'''"Deinococcus radiodurans RecA in complex with ATP-gamma-S"'''<br />
 
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==Overview==
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==Deinococcus radiodurans RecA in complex with ATP-gamma-S==
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The resistance of Deinococcus radiodurans (Dr) to extreme doses of, ionizing radiation depends on its highly efficient capacity to repair, dsDNA breaks. Dr RecA, the key protein in the repair of dsDNA breaks by, homologous recombination, promotes DNA strand-exchange by an unprecedented, inverse pathway, in which the presynaptic filament is formed on dsDNA, instead of ssDNA. In order to gain insight into the remarkable repair, capacity of Dr and the novel mechanistic features of its RecA protein, we, have determined its X-ray crystal structure in complex with ATPgammaS at, 2.5A resolution. Like RecA from Escherichia coli, Dr RecA crystallizes as, a helical filament that is closely related to its biologically relevant, form, but with a more compressed pitch of 67 A. Although the overall fold, of Dr RecA is similar to E.coli RecA, there is a large reorientation of, the C-terminal domain, which in E.coli RecA has a site for binding dsDNA., Compared to E.coli RecA, the inner surface along the central axis of the, Dr RecA filament has an increased positive electrostatic potential. Unique, amino acid residues in Dr RecA cluster around a flexible beta-hairpin that, has also been implicated in DNA binding.
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<StructureSection load='1xp8' size='340' side='right'caption='[[1xp8]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1xp8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XP8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XP8 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AGS:PHOSPHOTHIOPHOSPHORIC+ACID-ADENYLATE+ESTER'>AGS</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xp8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xp8 OCA], [https://pdbe.org/1xp8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xp8 RCSB], [https://www.ebi.ac.uk/pdbsum/1xp8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xp8 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/RECA_DEIRA RECA_DEIRA] Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.[HAMAP-Rule:MF_00268]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The resistance of Deinococcus radiodurans (Dr) to extreme doses of ionizing radiation depends on its highly efficient capacity to repair dsDNA breaks. Dr RecA, the key protein in the repair of dsDNA breaks by homologous recombination, promotes DNA strand-exchange by an unprecedented inverse pathway, in which the presynaptic filament is formed on dsDNA instead of ssDNA. In order to gain insight into the remarkable repair capacity of Dr and the novel mechanistic features of its RecA protein, we have determined its X-ray crystal structure in complex with ATPgammaS at 2.5A resolution. Like RecA from Escherichia coli, Dr RecA crystallizes as a helical filament that is closely related to its biologically relevant form, but with a more compressed pitch of 67 A. Although the overall fold of Dr RecA is similar to E.coli RecA, there is a large reorientation of the C-terminal domain, which in E.coli RecA has a site for binding dsDNA. Compared to E.coli RecA, the inner surface along the central axis of the Dr RecA filament has an increased positive electrostatic potential. Unique amino acid residues in Dr RecA cluster around a flexible beta-hairpin that has also been implicated in DNA binding.
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==About this Structure==
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Crystal structure of RecA from Deinococcus radiodurans: insights into the structural basis of extreme radioresistance.,Rajan R, Bell CE J Mol Biol. 2004 Dec 3;344(4):951-63. PMID:15544805<ref>PMID:15544805</ref>
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1XP8 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans] with SAP as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1XP8 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal structure of RecA from Deinococcus radiodurans: insights into the structural basis of extreme radioresistance., Rajan R, Bell CE, J Mol Biol. 2004 Dec 3;344(4):951-63. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15544805 15544805]
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</div>
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[[Category: Deinococcus radiodurans]]
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<div class="pdbe-citations 1xp8" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Bell, C.E.]]
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[[Category: Rajan, R.]]
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[[Category: SAP]]
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[[Category: atpase]]
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[[Category: dna-binding protein]]
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[[Category: dna-repair]]
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[[Category: radioresistance]]
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[[Category: recombination]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 06:14:46 2007''
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==See Also==
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*[[3D structures of recombinase A|3D structures of recombinase A]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Deinococcus radiodurans]]
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[[Category: Large Structures]]
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[[Category: Bell CE]]
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[[Category: Rajan R]]

Current revision

Deinococcus radiodurans RecA in complex with ATP-gamma-S

PDB ID 1xp8

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