1u9i

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{{Seed}}
 
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[[Image:1u9i.png|left|200px]]
 
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==Crystal Structure of Circadian Clock Protein KaiC with Phosphorylation Sites==
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The line below this paragraph, containing "STRUCTURE_1u9i", creates the "Structure Box" on the page.
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<StructureSection load='1u9i' size='340' side='right'caption='[[1u9i]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1u9i]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechococcus_elongatus_PCC_7942_=_FACHB-805 Synechococcus elongatus PCC 7942 = FACHB-805]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U9I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1U9I FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene>, <scene name='pdbligand=TPO:PHOSPHOTHREONINE'>TPO</scene></td></tr>
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{{STRUCTURE_1u9i| PDB=1u9i | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1u9i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u9i OCA], [https://pdbe.org/1u9i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1u9i RCSB], [https://www.ebi.ac.uk/pdbsum/1u9i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1u9i ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/KAIC_SYNE7 KAIC_SYNE7] Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction.<ref>PMID:9727980</ref> <ref>PMID:14709675</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u9/1u9i_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1u9i ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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In cyanobacteria, KaiC is an essential hexameric clock protein that forms the core of a circadian protein complex. KaiC can be phosphorylated, and the ratio of phospho-KaiC to non-phospho-KaiC is correlated with circadian period. Structural analyses of KaiC crystals identify three potential phosphorylation sites within a 10-A radius of the ATP binding regions that are at the T432, S431, and T426 residues in the KaiCII domains. When these residues are mutated by alanine substitution singly or in combination, KaiC phosphorylation is altered, and circadian rhythmicity is abolished. These alanine substitutions do not prevent KaiC from hexamerizing. Intriguingly, the ability of KaiC overexpression to repress its own promoter is also not prevented by alanine substitutions at these sites, implying that the capability of KaiC to repress its promoter is not sufficient to allow the clockwork to oscillate. The KaiC structure and the mutational analysis suggest that S431 and T426 may share a phosphate that can shuttle between these two residues. Because the phosphorylation status of KaiC oscillates over the daily cycle, and KaiC phosphorylation is essential for clock function as shown here, daily modulations of KaiC activity by phosphorylation at T432 and S431/T426 seem to be key components of the circadian clockwork in cyanobacteria.
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===Crystal Structure of Circadian Clock Protein KaiC with Phosphorylation Sites===
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Identification of key phosphorylation sites in the circadian clock protein KaiC by crystallographic and mutagenetic analyses.,Xu Y, Mori T, Pattanayek R, Pattanayek S, Egli M, Johnson CH Proc Natl Acad Sci U S A. 2004 Sep 21;101(38):13933-8. Epub 2004 Sep 3. PMID:15347809<ref>PMID:15347809</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 1u9i" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_15347809}}, adds the Publication Abstract to the page
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*[[Circadian clock protein 3D structures|Circadian clock protein 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 15347809 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_15347809}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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1U9I is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Synechococcus_sp. Synechococcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U9I OCA].
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[[Category: Synechococcus elongatus PCC 7942 = FACHB-805]]
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[[Category: Egli M]]
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==Reference==
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[[Category: Johnson CH]]
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<ref group="xtra">PMID:15347809</ref><references group="xtra"/>
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[[Category: Mori T]]
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[[Category: Synechococcus sp.]]
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[[Category: Pattanayek R]]
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[[Category: Egli, M.]]
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[[Category: Pattanayek S]]
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[[Category: Johnson, C H.]]
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[[Category: Xu Y]]
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[[Category: Mori, T.]]
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[[Category: Pattanayek, R.]]
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[[Category: Pattanayek, S.]]
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[[Category: Xu, Y.]]
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[[Category: Circadian]]
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[[Category: Clock]]
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[[Category: Hexamer]]
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[[Category: Homohexamer]]
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[[Category: Kaia]]
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[[Category: Kaib]]
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[[Category: Kaic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 13:08:52 2009''
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Current revision

Crystal Structure of Circadian Clock Protein KaiC with Phosphorylation Sites

PDB ID 1u9i

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