1p7d

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{{Seed}}
 
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[[Image:1p7d.png|left|200px]]
 
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==Crystal structure of the Lambda Integrase (residues 75-356) bound to DNA==
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The line below this paragraph, containing "STRUCTURE_1p7d", creates the "Structure Box" on the page.
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<StructureSection load='1p7d' size='340' side='right'caption='[[1p7d]], [[Resolution|resolution]] 2.95&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1p7d]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_Lambda Escherichia virus Lambda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P7D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1P7D FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.95&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PTR:O-PHOSPHOTYROSINE'>PTR</scene></td></tr>
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{{STRUCTURE_1p7d| PDB=1p7d | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1p7d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1p7d OCA], [https://pdbe.org/1p7d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1p7d RCSB], [https://www.ebi.ac.uk/pdbsum/1p7d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1p7d ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/VINT_LAMBD VINT_LAMBD] Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p7/1p7d_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1p7d ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The bacteriophage lambda integrase protein (lambda Int) belongs to a family of tyrosine recombinases that catalyze DNA rearrangements. We have determined a crystal structure of lambda Int complexed with a cleaved DNA substrate through a covalent phosphotyrosine bond. In comparison to an earlier unliganded structure, we observe a drastic conformational change in DNA-bound lambda Int that brings Tyr342 into the active site for cleavage of the DNA in cis. A flexible linker connects the central and the catalytic domains, allowing the protein to encircle the DNA. Binding specificity is achieved through direct interactions with the DNA and indirect readout of the flexibility of the att site. The conformational switch that activates lambda Int for DNA cleavage exposes the C-terminal 8 residues for interactions with a neighboring Int molecule. The protein interactions mediated by lambda Int's C-terminal tail offer a mechanism for the allosteric control of cleavage activity in higher order lambda Int complexes.
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===Crystal structure of the Lambda Integrase (residues 75-356) bound to DNA===
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A conformational switch controls the DNA cleavage activity of lambda integrase.,Aihara H, Kwon HJ, Nunes-Duby SE, Landy A, Ellenberger T Mol Cell. 2003 Jul;12(1):187-98. PMID:12887904<ref>PMID:12887904</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 1p7d" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_12887904}}, adds the Publication Abstract to the page
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*[[Retroviral integrase 3D structures|Retroviral integrase 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 12887904 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_12887904}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Escherichia virus Lambda]]
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1P7D is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Enterobacteria_phage_lambda Enterobacteria phage lambda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P7D OCA].
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[[Category: Large Structures]]
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[[Category: Aihara H]]
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==Reference==
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[[Category: Ellenberger T]]
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<ref group="xtra">PMID:12887904</ref><references group="xtra"/>
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[[Category: Kwon HJ]]
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[[Category: Enterobacteria phage lambda]]
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[[Category: Landy A]]
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[[Category: Aihara, H.]]
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[[Category: Nunes-Duby SE]]
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[[Category: Ellenberger, T.]]
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[[Category: Kwon, H J.]]
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[[Category: Landy, A.]]
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[[Category: Nunes-Duby, S E.]]
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[[Category: Protein-dna complex]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 13:15:30 2009''
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Current revision

Crystal structure of the Lambda Integrase (residues 75-356) bound to DNA

PDB ID 1p7d

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