1dgw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:53, 7 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1dgw.png|left|200px]]
 
-
<!--
+
==Structure of the rhombohedral crystal of canavalin from jack bean==
-
The line below this paragraph, containing "STRUCTURE_1dgw", creates the "Structure Box" on the page.
+
<StructureSection load='1dgw' size='340' side='right'caption='[[1dgw]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1dgw]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Canavalia_ensiformis Canavalia ensiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DGW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DGW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
{{STRUCTURE_1dgw| PDB=1dgw | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dgw OCA], [https://pdbe.org/1dgw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dgw RCSB], [https://www.ebi.ac.uk/pdbsum/1dgw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dgw ProSAT]</span></td></tr>
-
 
+
</table>
-
===Structure of the rhombohedral crystal of canavalin from jack bean===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/CANA_CANEN CANA_CANEN] Seed storage protein.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_11375502}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 11375502 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dg/1dgw_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_11375502}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1DGW is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Canavalia_ensiformis Canavalia ensiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DGW OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dgw ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:11375502</ref><references group="xtra"/>
+
</StructureSection>
[[Category: Canavalia ensiformis]]
[[Category: Canavalia ensiformis]]
-
[[Category: Ko, T P.]]
+
[[Category: Large Structures]]
-
[[Category: McPherson, A.]]
+
[[Category: Ko T-P]]
-
[[Category: Duplicated swiss-roll beta barrel]]
+
[[Category: McPherson A]]
-
[[Category: Loops with alpha helice]]
+
-
[[Category: Merohedral/ hemihedral twinning]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 13:18:18 2009''
+

Current revision

Structure of the rhombohedral crystal of canavalin from jack bean

PDB ID 1dgw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools