1unf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:52, 13 December 2023) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1unf.png|left|200px]]
 
-
<!--
+
==The crystal structure of the eukaryotic FeSOD from Vigna unguiculata suggests a new enzymatic mechanism==
-
The line below this paragraph, containing "STRUCTURE_1unf", creates the "Structure Box" on the page.
+
<StructureSection load='1unf' size='340' side='right'caption='[[1unf]], [[Resolution|resolution]] 1.97&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1unf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vigna_unguiculata Vigna unguiculata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UNF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UNF FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.97&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-
{{STRUCTURE_1unf| PDB=1unf | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1unf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1unf OCA], [https://pdbe.org/1unf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1unf RCSB], [https://www.ebi.ac.uk/pdbsum/1unf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1unf ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9M7R2_VIGUN Q9M7R2_VIGUN] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.[RuleBase:RU000414]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/un/1unf_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1unf ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Superoxide dismutases (SODs) are a family of metalloenzymes that catalyze the dismutation of superoxide anion radicals into molecular oxygen and hydrogen peroxide. Iron superoxide dismutases (FeSODs) are only expressed in some prokaryotes and plants. A new and highly active FeSOD with an unusual subcellular localization has recently been isolated from the plant Vigna unguiculata (cowpea). This protein functions as a homodimer and, in contrast to the other members of the SOD family, is localized to the cytosol. The crystal structure of the recombinant enzyme has been solved and the model refined to 1.97 A resolution. The superoxide anion binding site is located in a cleft close to the dimer interface. The coordination geometry of the Fe site is a distorted trigonal bipyramidal arrangement, whose axial ligands are His43 and a solvent molecule, and whose in-plane ligands are His95, Asp195, and His199. A comparison of the structural features of cowpea FeSOD with those of homologous SODs reveals subtle differences in regard to the metal-protein interactions, and confirms the existence of two regions that may control the traffic of substrate and product: one located near the Fe binding site, and another in the dimer interface. The evolutionary conservation of reciprocal interactions of both monomers in neighboring active sites suggests possible subunit cooperation during catalysis.
-
===THE CRYSTAL STRUCTURE OF THE EUKARYOTIC FESOD FROM VIGNA UNGUICULATA SUGGESTS A NEW ENZYMATIC MECHANISM===
+
The crystal structure of an eukaryotic iron superoxide dismutase suggests intersubunit cooperation during catalysis.,Munoz IG, Moran JF, Becana M, Montoya G Protein Sci. 2005 Feb;14(2):387-94. PMID:15659371<ref>PMID:15659371</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 1unf" style="background-color:#fffaf0;"></div>
-
<!--
+
==See Also==
-
The line below this paragraph, {{ABSTRACT_PUBMED_15659371}}, adds the Publication Abstract to the page
+
*[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 15659371 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_15659371}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
1UNF is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Vigna_unguiculata Vigna unguiculata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UNF OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:15659371</ref><references group="xtra"/>
+
-
[[Category: Superoxide dismutase]]
+
[[Category: Vigna unguiculata]]
[[Category: Vigna unguiculata]]
-
[[Category: Becana, M.]]
+
[[Category: Becana M]]
-
[[Category: Montoya, G.]]
+
[[Category: Montoya G]]
-
[[Category: Moran, J F.]]
+
[[Category: Moran JF]]
-
[[Category: Munoz, I G.]]
+
[[Category: Munoz IG]]
-
[[Category: Eukaryotic]]
+
-
[[Category: Metalloprotein]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Superoxide dismutase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 13:46:43 2009''
+

Current revision

The crystal structure of the eukaryotic FeSOD from Vigna unguiculata suggests a new enzymatic mechanism

PDB ID 1unf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools