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1v49

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{{Seed}}
 
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[[Image:1v49.png|left|200px]]
 
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==Solution structure of microtubule-associated protein light chain-3==
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The line below this paragraph, containing "STRUCTURE_1v49", creates the "Structure Box" on the page.
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<StructureSection load='1v49' size='340' side='right'caption='[[1v49]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1v49]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V49 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V49 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v49 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v49 OCA], [https://pdbe.org/1v49 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v49 RCSB], [https://www.ebi.ac.uk/pdbsum/1v49 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v49 ProSAT]</span></td></tr>
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{{STRUCTURE_1v49| PDB=1v49 | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/MLP3B_HUMAN MLP3B_HUMAN] Involved in formation of autophagosomal vacuoles (autophagosomes).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v4/1v49_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v49 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Microtubule-associated protein (MAP) light chain 3 (LC3) is a human homologue of yeast Apg8/Aut7/Cvt5 (Atg8), which is essential for autophagy. MAP-LC3 is cleaved by a cysteine protease to produce LC3-I, which is located in cytosolic fraction. LC3-I, in turn, is converted to LC3-II through the actions of E1- and E2-like enzymes. LC3-II is covalently attached to phosphatidylethanolamine on its C terminus, and it binds tightly to autophagosome membranes. We determined the solution structure of LC3-I and found that it is divided into N- and C-terminal subdomains. Additional analysis using a photochemically induced dynamic nuclear polarization technique also showed that the N-terminal subdomain of LC3-I makes contact with the surface of the C-terminal subdomain and that LC3-I adopts a single compact conformation in solution. Moreover, the addition of dodecylphosphocholine into the LC3-I solution induced chemical shift perturbations primarily in the C-terminal subdomain, which implies that the two subdomains have different sensitivities to dodecylphosphocholine micelles. On the other hand, deletion of the N-terminal subdomain abolished binding of tubulin and microtubules. Thus, we showed that two subdomains of the LC3-I structure have distinct functions, suggesting that MAP-LC3 can act as an adaptor protein between microtubules and autophagosomes.
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===Solution structure of microtubule-associated protein light chain-3===
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Solution structure of microtubule-associated protein light chain 3 and identification of its functional subdomains.,Kouno T, Mizuguchi M, Tanida I, Ueno T, Kanematsu T, Mori Y, Shinoda H, Hirata M, Kominami E, Kawano K J Biol Chem. 2005 Jul 1;280(26):24610-7. Epub 2005 Apr 27. PMID:15857831<ref>PMID:15857831</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 1v49" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_15857831}}, adds the Publication Abstract to the page
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*[[Microtubule-associated protein 3D structures|Microtubule-associated protein 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 15857831 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_15857831}}
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__TOC__
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</StructureSection>
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==About this Structure==
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1V49 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V49 OCA].
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==Reference==
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<ref group="xtra">PMID:15857831</ref><references group="xtra"/>
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Kawano, K.]]
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[[Category: Large Structures]]
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[[Category: Kominami, E.]]
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[[Category: Kawano K]]
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[[Category: Kouno, T.]]
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[[Category: Kominami E]]
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[[Category: Mizuguchi, M.]]
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[[Category: Kouno T]]
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[[Category: Tanida, I.]]
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[[Category: Mizuguchi M]]
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[[Category: Ueno, T.]]
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[[Category: Tanida I]]
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[[Category: Ubiquitin fold]]
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[[Category: Ueno T]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 14:50:01 2009''
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Current revision

Solution structure of microtubule-associated protein light chain-3

PDB ID 1v49

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