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1qyr

From Proteopedia

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{{Seed}}
 
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[[Image:1qyr.png|left|200px]]
 
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==2.1 Angstrom Crystal structure of KsgA: A Universally Conserved Adenosine Dimethyltransferase==
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The line below this paragraph, containing "STRUCTURE_1qyr", creates the "Structure Box" on the page.
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<StructureSection load='1qyr' size='340' side='right'caption='[[1qyr]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1qyr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QYR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QYR FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qyr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qyr OCA], [https://pdbe.org/1qyr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qyr RCSB], [https://www.ebi.ac.uk/pdbsum/1qyr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qyr ProSAT]</span></td></tr>
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{{STRUCTURE_1qyr| PDB=1qyr | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/RSMA_ECOLI RSMA_ECOLI] Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Has also a DNA glycosylase/AP lyase activity that removes C mispaired with oxidized T from DNA, and may play a role in protection of DNA against oxidative stress.<ref>PMID:3905517</ref> <ref>PMID:19223326</ref> <ref>PMID:18990185</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qy/1qyr_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qyr ConSurf].
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<div style="clear:both"></div>
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===2.1 Angstrom Crystal structure of KsgA: A Universally Conserved Adenosine Dimethyltransferase===
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==See Also==
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*[[Adenosine dimethyltransferase 3D structures|Adenosine dimethyltransferase 3D structures]]
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== References ==
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<references/>
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The line below this paragraph, {{ABSTRACT_PUBMED_15136037}}, adds the Publication Abstract to the page
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__TOC__
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(as it appears on PubMed at http://www.pubmed.gov), where 15136037 is the PubMed ID number.
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</StructureSection>
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{{ABSTRACT_PUBMED_15136037}}
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==About this Structure==
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1QYR is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QYR OCA].
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==Reference==
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<ref group="xtra">PMID:15136037</ref><references group="xtra"/>
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[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Farrell, H C.O.]]
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[[Category: Large Structures]]
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[[Category: Rife, J P.]]
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[[Category: O'Farrell HC]]
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[[Category: Scarsdale, J N.]]
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[[Category: Rife JP]]
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[[Category: Wright, H T.]]
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[[Category: Scarsdale JN]]
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[[Category: Adenosine dimethyltransferase]]
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[[Category: Wright HT]]
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[[Category: Kasugamycin resistance]]
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[[Category: Rrna modification]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 15:04:18 2009''
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Current revision

2.1 Angstrom Crystal structure of KsgA: A Universally Conserved Adenosine Dimethyltransferase

PDB ID 1qyr

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