This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1k5c
From Proteopedia
(Difference between revisions)
| (9 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{Seed}} | ||
| - | [[Image:1k5c.png|left|200px]] | ||
| - | + | ==Endopolygalacturonase I from Stereum purpureum at 0.96 A resolution== | |
| - | + | <StructureSection load='1k5c' size='340' side='right'caption='[[1k5c]], [[Resolution|resolution]] 0.96Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[1k5c]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Chondrostereum_purpureum Chondrostereum purpureum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K5C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K5C FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 0.96Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k5c OCA], [https://pdbe.org/1k5c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k5c RCSB], [https://www.ebi.ac.uk/pdbsum/1k5c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k5c ProSAT]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/P79074_9AGAR P79074_9AGAR] | |
| - | + | == Evolutionary Conservation == | |
| - | < | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | + | Check<jmol> | |
| - | + | <jmolCheckbox> | |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k5/1k5c_consurf.spt"</scriptWhenChecked> | |
| - | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |
| - | + | <text>to colour the structure by Evolutionary Conservation</text> | |
| - | == | + | </jmolCheckbox> |
| - | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1k5c ConSurf]. | |
| - | + | <div style="clear:both"></div> | |
| - | == | + | __TOC__ |
| - | < | + | </StructureSection> |
[[Category: Chondrostereum purpureum]] | [[Category: Chondrostereum purpureum]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Kato | + | [[Category: Kato H]] |
| - | [[Category: Miyairi | + | [[Category: Miyairi K]] |
| - | [[Category: Nakatsu | + | [[Category: Nakatsu T]] |
| - | [[Category: Okuno | + | [[Category: Okuno T]] |
| - | [[Category: Shimizu | + | [[Category: Shimizu T]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Endopolygalacturonase I from Stereum purpureum at 0.96 A resolution
| |||||||||||
