1mdv

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{{Seed}}
 
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[[Image:1mdv.png|left|200px]]
 
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==KEY ROLE OF PHENYLALANINE 20 IN CYTOCHROME C3: STRUCTURE, STABILITY AND FUNCTION STUDIES==
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The line below this paragraph, containing "STRUCTURE_1mdv", creates the "Structure Box" on the page.
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<StructureSection load='1mdv' size='340' side='right'caption='[[1mdv]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1mdv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._Hildenborough Desulfovibrio vulgaris str. Hildenborough]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MDV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MDV FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
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{{STRUCTURE_1mdv| PDB=1mdv | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mdv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mdv OCA], [https://pdbe.org/1mdv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mdv RCSB], [https://www.ebi.ac.uk/pdbsum/1mdv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mdv ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CYC3_NITV2 CYC3_NITV2] Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/md/1mdv_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mdv ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Aromatic residues in c-type cytochromes might have an important function in the folding and/or electron transferring properties of the molecule. In the tetraheme cytochrome c3 (Mr 13 000) from Desulfovibrio vulgaris Hildenborough, Phe20, is located between heme 1 and heme 3 with its aromatic ring close and almost parallel to the ring plane of heme 1. We replaced this residue by a nonaromatic hydrophobe residue, leucine, and analyzed the effects in terms of functional, structural, and physicochemical properties. While the F20L replacement did not have any strong effects on the heme region stability, a decrease of the thermostability of the whole molecule was observed. In the same way, the four macroscopic redox potentials were affected by the mutation as well as the flexibility of the surface loop around heme 4. The F20L replacement itself and/or this structural modification might be responsible for the loss of the intermolecular cooperativity between F20L cytochrome c3 molecules.
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===KEY ROLE OF PHENYLALANINE 20 IN CYTOCHROME C3: STRUCTURE, STABILITY AND FUNCTION STUDIES===
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Key role of phenylalanine 20 in cytochrome c3: structure, stability, and function studies.,Dolla A, Arnoux P, Protasevich I, Lobachov V, Brugna M, Giudici-Orticoni MT, Haser R, Czjzek M, Makarov A, Bruschi M Biochemistry. 1999 Jan 5;38(1):33-41. PMID:9890880<ref>PMID:9890880</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 1mdv" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_9890880}}, adds the Publication Abstract to the page
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*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 9890880 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_9890880}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Desulfovibrio vulgaris str. Hildenborough]]
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1MDV is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MDV OCA].
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[[Category: Large Structures]]
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[[Category: Arnoux P]]
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==Reference==
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[[Category: Brugna M]]
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<ref group="xtra">PMID:9890880</ref><references group="xtra"/>
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[[Category: Brushi M]]
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[[Category: Desulfovibrio vulgaris]]
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[[Category: Czjzek M]]
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[[Category: Arnoux, P.]]
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[[Category: Dolla A]]
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[[Category: Brugna, M.]]
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[[Category: Guidici-Orticoni MT]]
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[[Category: Brushi, M.]]
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[[Category: Haser R]]
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[[Category: Czjzek, M.]]
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[[Category: Lobachov V]]
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[[Category: Dolla, A.]]
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[[Category: Makarov A]]
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[[Category: Guidici-Orticoni, M T.]]
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[[Category: Protasevich I]]
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[[Category: Haser, R.]]
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[[Category: Lobachov, V.]]
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[[Category: Makarov, A.]]
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[[Category: Protasevich, I.]]
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[[Category: Desulfovibrio vulgaris hildenborough]]
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[[Category: Electron transport]]
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[[Category: Mutant cytochrome c3]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 15:20:04 2009''
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Current revision

KEY ROLE OF PHENYLALANINE 20 IN CYTOCHROME C3: STRUCTURE, STABILITY AND FUNCTION STUDIES

PDB ID 1mdv

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