1y6p

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(New page: 200px<br /><applet load="1y6p" size="450" color="white" frame="true" align="right" spinBox="true" caption="1y6p, resolution 2.25&Aring;" /> '''Crystal structure of...)
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[[Image:1y6p.gif|left|200px]]<br /><applet load="1y6p" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1y6p, resolution 2.25&Aring;" />
 
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'''Crystal structure of disulfide engineered porcine pancratic phospholipase a2 to group-x isozyme'''<br />
 
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==Overview==
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==Crystal structure of disulfide engineered porcine pancratic phospholipase a2 to group-x isozyme==
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The family of secreted 14 kDa phospholipase A(2) (PLA2) enzymes have a, common motif for the catalytic site but differ in their disulfide, architecture. The functional significance of such structural changes has, been analyzed by comparing the kinetic and spectroscopic properties of a, series of disulfide mutants engineered into the sequence of pig pancreatic, IB PLA2 to resemble the mammalian paralogues of the PLA2 family [Janssen, et al. (1999) Eur. J. Biochem. 261, 197-207, 1999]. We report a detailed, comparison of the functional parameters of pig iso-PLA2, as well as, several of the human homologues, with these disulfide engineered mutants, of pig IB PLA2. The crystal structure of the ligand free and the active, site inhibitor-MJ33 bound forms of PLA2 engineered to have the disulfide, bonding pattern of group-X (eng-X) are also reported and compared with the, structure of group-IB and human group-X PLA2. The engineered mutants show, noticeable functional differences that are rationalized in terms of, spectroscopic properties and the differences detected in the crystal, structure of eng-X. A major difference between the eng-mutants is in the, calcium binding to the enzyme in the aqueous phase, which also influences, the binding of the active site directed ligands. We suggest that the, disulfide architecture of the PLA2 paralogues has a marginal influence on, interface binding. In this comparison, the modest differences observed in, the interfacial kinetics are attributed to the changes in the side chain, residues. This in turn influences the coupling of the catalytic cycle to, the calcium binding and the interfacial binding event.
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<StructureSection load='1y6p' size='340' side='right'caption='[[1y6p]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1y6p]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y6P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y6P FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y6p OCA], [https://pdbe.org/1y6p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y6p RCSB], [https://www.ebi.ac.uk/pdbsum/1y6p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y6p ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PA21B_PIG PA21B_PIG] PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y6/1y6p_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y6p ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The family of secreted 14 kDa phospholipase A(2) (PLA2) enzymes have a common motif for the catalytic site but differ in their disulfide architecture. The functional significance of such structural changes has been analyzed by comparing the kinetic and spectroscopic properties of a series of disulfide mutants engineered into the sequence of pig pancreatic IB PLA2 to resemble the mammalian paralogues of the PLA2 family [Janssen et al. (1999) Eur. J. Biochem. 261, 197-207, 1999]. We report a detailed comparison of the functional parameters of pig iso-PLA2, as well as several of the human homologues, with these disulfide engineered mutants of pig IB PLA2. The crystal structure of the ligand free and the active site inhibitor-MJ33 bound forms of PLA2 engineered to have the disulfide bonding pattern of group-X (eng-X) are also reported and compared with the structure of group-IB and human group-X PLA2. The engineered mutants show noticeable functional differences that are rationalized in terms of spectroscopic properties and the differences detected in the crystal structure of eng-X. A major difference between the eng-mutants is in the calcium binding to the enzyme in the aqueous phase, which also influences the binding of the active site directed ligands. We suggest that the disulfide architecture of the PLA2 paralogues has a marginal influence on interface binding. In this comparison, the modest differences observed in the interfacial kinetics are attributed to the changes in the side chain residues. This in turn influences the coupling of the catalytic cycle to the calcium binding and the interfacial binding event.
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==About this Structure==
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Kinetic and structural properties of disulfide engineered phospholipase A2: insight into the role of disulfide bonding patterns.,Yu BZ, Pan YH, Janssen MJ, Bahnson BJ, Jain MK Biochemistry. 2005 Mar 8;44(9):3369-79. PMID:15736947<ref>PMID:15736947</ref>
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1Y6P is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa] with CA and CL as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Phospholipase_A(2) Phospholipase A(2)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.4 3.1.1.4] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1Y6P OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Kinetic and structural properties of disulfide engineered phospholipase A2: insight into the role of disulfide bonding patterns., Yu BZ, Pan YH, Janssen MJ, Bahnson BJ, Jain MK, Biochemistry. 2005 Mar 8;44(9):3369-79. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15736947 15736947]
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</div>
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[[Category: Phospholipase A(2)]]
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<div class="pdbe-citations 1y6p" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Sus scrofa]]
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[[Category: Bahnson, B.J.]]
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[[Category: Jain, M.K.]]
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[[Category: Jassen, M.J.W.]]
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[[Category: Pan, Y.H.]]
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[[Category: Yu, B.Z.]]
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[[Category: CA]]
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[[Category: CL]]
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[[Category: disulfide engineered pla2]]
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[[Category: hydrolase]]
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[[Category: porcine pancratic isozyme]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 06:36:26 2007''
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==See Also==
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*[[Phospholipase A2 3D structures|Phospholipase A2 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Sus scrofa]]
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[[Category: Bahnson BJ]]
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[[Category: Jain MK]]
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[[Category: Jassen MJW]]
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[[Category: Pan YH]]
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[[Category: Yu BZ]]

Current revision

Crystal structure of disulfide engineered porcine pancratic phospholipase a2 to group-x isozyme

PDB ID 1y6p

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