2r2d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:19, 21 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2r2d.png|left|200px]]
 
-
<!--
+
==Structure of a quorum-quenching lactonase (AiiB) from Agrobacterium tumefaciens==
-
The line below this paragraph, containing "STRUCTURE_2r2d", creates the "Structure Box" on the page.
+
<StructureSection load='2r2d' size='340' side='right'caption='[[2r2d]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2r2d]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R2D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R2D FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_2r2d| PDB=2r2d | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r2d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r2d OCA], [https://pdbe.org/2r2d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r2d RCSB], [https://www.ebi.ac.uk/pdbsum/2r2d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r2d ProSAT]</span></td></tr>
-
 
+
</table>
-
===Structure of a quorum-quenching lactonase (AiiB) from Agrobacterium tumefaciens===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/AHLLB_AGRFC AHLLB_AGRFC]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_17900178}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 17900178 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r2/2r2d_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_17900178}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
2R2D is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R2D OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r2d ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:17900178</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Agrobacterium tumefaciens]]
+
[[Category: Agrobacterium fabrum str. C58]]
-
[[Category: Fast, W.]]
+
[[Category: Large Structures]]
-
[[Category: Hoang, Q.]]
+
[[Category: Fast W]]
-
[[Category: Liu, D.]]
+
[[Category: Hoang Q]]
-
[[Category: Momb, J.]]
+
[[Category: Liu D]]
-
[[Category: Petsko, G A.]]
+
[[Category: Momb J]]
-
[[Category: Ringe, D.]]
+
[[Category: Petsko GA]]
-
[[Category: Thomas, P W.]]
+
[[Category: Ringe D]]
-
[[Category: Agrobacterium tumefacien]]
+
[[Category: Thomas PW]]
-
[[Category: Aiib]]
+
-
[[Category: Di-nuclear zinc center]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Lactonase]]
+
-
[[Category: N-acyl hompserine lactone]]
+
-
[[Category: Phosphate]]
+
-
[[Category: Quorum quenching]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 15:42:44 2009''
+

Current revision

Structure of a quorum-quenching lactonase (AiiB) from Agrobacterium tumefaciens

PDB ID 2r2d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2r2d"
Personal tools