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1ybm
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="1ybm" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ybm, resolution 2.096Å" /> '''X-ray structure of ...) |
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| - | [[Image:1ybm.gif|left|200px]]<br /><applet load="1ybm" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1ybm, resolution 2.096Å" /> | ||
| - | '''X-ray structure of selenomethionyl gene product from Arabidopsis thaliana at5g02240 in space group P21212'''<br /> | ||
| - | == | + | ==X-ray structure of selenomethionyl gene product from Arabidopsis thaliana at5g02240 in space group P21212== |
| - | + | <StructureSection load='1ybm' size='340' side='right'caption='[[1ybm]], [[Resolution|resolution]] 2.10Å' scene=''> | |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[1ybm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YBM FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.096Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ybm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybm OCA], [https://pdbe.org/1ybm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ybm RCSB], [https://www.ebi.ac.uk/pdbsum/1ybm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ybm ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Y5224_ARATH Y5224_ARATH] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yb/1ybm_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ybm ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Arabidopsis thaliana]] | [[Category: Arabidopsis thaliana]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Allard | + | [[Category: Allard STM]] |
| - | [[Category: Bingman | + | [[Category: Bingman CA]] |
| - | [[Category: Bitto | + | [[Category: Bitto E]] |
| - | + | [[Category: Phillips Jr GN]] | |
| - | [[Category: Jr | + | [[Category: Smith DW]] |
| - | [[Category: Smith | + | [[Category: Wesenberg GE]] |
| - | [[Category: Wesenberg | + | |
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Current revision
X-ray structure of selenomethionyl gene product from Arabidopsis thaliana at5g02240 in space group P21212
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