1sjx

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{{Seed}}
 
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[[Image:1sjx.png|left|200px]]
 
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==Three-Dimensional Structure of a Llama VHH Domain OE7 binding the cell wall protein Malf1==
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The line below this paragraph, containing "STRUCTURE_1sjx", creates the "Structure Box" on the page.
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<StructureSection load='1sjx' size='340' side='right'caption='[[1sjx]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1sjx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lama_glama Lama glama]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SJX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SJX FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
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{{STRUCTURE_1sjx| PDB=1sjx | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sjx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sjx OCA], [https://pdbe.org/1sjx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sjx RCSB], [https://www.ebi.ac.uk/pdbsum/1sjx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sjx ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sj/1sjx_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sjx ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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As part of research exploring the feasibility of using antibody fragments to inhibit the growth of organisms implicated in dandruff, we isolated antibody fragments that bind to a cell surface protein of Malassezia furfur in the presence of shampoo. We found that phage display of llama single-domain antibody fragments (VHHs) can be extended to very harsh conditions, such as the presence of shampoo containing nonionic and anionic surfactants. We selected several VHHs that bind to the cell wall protein Malf1 of M. furfur, a fungus implicated in causing dandruff. In addition to high stability in the presence of shampoo, these VHHs are also stable under other denaturing conditions, such as high urea concentrations. Many of the stable VHHs were found to contain arginine at position 44. Replacement of the native amino acid at position 44 with arginine in the most stable VHH that lacked this arginine resulted in a dramatic further increase in the stability. The combination of the unique properties of VHHs together with applied phage display and protein engineering is a powerful method for obtaining highly stable VHHs that can be used in a wide range of applications.
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===Three-Dimensional Structure of a Llama VHH Domain OE7 binding the cell wall protein Malf1===
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Isolation of llama antibody fragments for prevention of dandruff by phage display in shampoo.,Dolk E, van der Vaart M, Lutje Hulsik D, Vriend G, de Haard H, Spinelli S, Cambillau C, Frenken L, Verrips T Appl Environ Microbiol. 2005 Jan;71(1):442-50. PMID:15640220<ref>PMID:15640220</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 1sjx" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_15640220}}, adds the Publication Abstract to the page
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*[[Antibody 3D structures|Antibody 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 15640220 is the PubMed ID number.
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*[[3D structures of non-human antibody|3D structures of non-human antibody]]
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== References ==
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{{ABSTRACT_PUBMED_15640220}}
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<references/>
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__TOC__
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==About this Structure==
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</StructureSection>
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1SJX is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Lama_glama Lama glama]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SJX OCA].
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==Reference==
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<ref group="xtra">PMID:15640220</ref><references group="xtra"/>
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[[Category: Lama glama]]
[[Category: Lama glama]]
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[[Category: Cambillau, C.]]
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[[Category: Large Structures]]
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[[Category: Dolk, E.]]
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[[Category: Cambillau C]]
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[[Category: Frenken, L.]]
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[[Category: Dolk E]]
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[[Category: Haard, H de.]]
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[[Category: Frenken L]]
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[[Category: Hulsik, D L.]]
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[[Category: Hulsik DL]]
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[[Category: Spinelli, S.]]
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[[Category: Spinelli S]]
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[[Category: Vaart, M van der.]]
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[[Category: Verrips T]]
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[[Category: Verrips, T.]]
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[[Category: Vriend G]]
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[[Category: Vriend, G.]]
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[[Category: De Haard H]]
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[[Category: Camelids antibody]]
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[[Category: Van der Vaart M]]
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[[Category: Dandruff]]
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[[Category: Heavy chain]]
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[[Category: Phage display]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 15:51:36 2009''
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Current revision

Three-Dimensional Structure of a Llama VHH Domain OE7 binding the cell wall protein Malf1

PDB ID 1sjx

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