This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2k2e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (19:09, 29 May 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2k2e.png|left|200px]]
 
-
<!--
+
==Solution NMR structure of Bordetella pertussis protein BP2786, a Mth938-like domain. Northeast Structural Genomics Consortium target BeR31==
-
The line below this paragraph, containing "STRUCTURE_2k2e", creates the "Structure Box" on the page.
+
<StructureSection load='2k2e' size='340' side='right'caption='[[2k2e]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2k2e]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bordetella_pertussis_Tohama_I Bordetella pertussis Tohama I]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K2E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K2E FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k2e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k2e OCA], [https://pdbe.org/2k2e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k2e RCSB], [https://www.ebi.ac.uk/pdbsum/2k2e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k2e ProSAT]</span></td></tr>
-
{{STRUCTURE_2k2e| PDB=2k2e | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Solution NMR structure of Bordetella pertussis protein BP2786, a Mth938-like domain. Northeast Structural Genomics Consortium target BeR31===
+
[https://www.uniprot.org/uniprot/Q7VV99_BORPE Q7VV99_BORPE]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2K2E is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bordetella_pertussis_tohama_i Bordetella pertussis tohama i]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K2E OCA].
+
<jmolCheckbox>
-
[[Category: Bordetella pertussis tohama i]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k2/2k2e_consurf.spt"</scriptWhenChecked>
-
[[Category: Acton, T B.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Baran, M C.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Cort, J R.]]
+
</jmolCheckbox>
-
[[Category: Ho, C K.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2k2e ConSurf].
-
[[Category: Kennedy, M A.]]
+
<div style="clear:both"></div>
-
[[Category: Liu, J.]]
+
__TOC__
-
[[Category: Maglaqui, M.]]
+
</StructureSection>
-
[[Category: Montelione, G T.]]
+
[[Category: Bordetella pertussis Tohama I]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Large Structures]]
-
[[Category: Nwosu, C.]]
+
[[Category: Acton TB]]
-
[[Category: Rost, B.]]
+
[[Category: Baran MC]]
-
[[Category: Swapna, G.]]
+
[[Category: Cort JR]]
-
[[Category: Xiao, R.]]
+
[[Category: Ho CK]]
-
[[Category: Cog03737]]
+
[[Category: Kennedy MA]]
-
[[Category: Duf498]]
+
[[Category: Liu J]]
-
[[Category: Mth938-like fold]]
+
[[Category: Maglaqui M]]
-
[[Category: Nesg]]
+
[[Category: Montelione GT]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: Nwosu C]]
-
[[Category: Protein structure initiative]]
+
[[Category: Rost B]]
-
[[Category: Psi-2]]
+
[[Category: Swapna G]]
-
[[Category: Structural genomic]]
+
[[Category: Xiao R]]
-
[[Category: Unknown function]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 16:16:03 2009''
+

Current revision

Solution NMR structure of Bordetella pertussis protein BP2786, a Mth938-like domain. Northeast Structural Genomics Consortium target BeR31

PDB ID 2k2e

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2k2e"
Personal tools