2f1n

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{{Seed}}
 
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[[Image:2f1n.png|left|200px]]
 
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==Structure of CdtB, the biologically active subunit of Cytolethal Distending Toxin==
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The line below this paragraph, containing "STRUCTURE_2f1n", creates the "Structure Box" on the page.
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<StructureSection load='2f1n' size='340' side='right'caption='[[2f1n]], [[Resolution|resolution]] 1.73&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2f1n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F1N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F1N FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.73&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f1n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f1n OCA], [https://pdbe.org/2f1n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f1n RCSB], [https://www.ebi.ac.uk/pdbsum/2f1n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f1n ProSAT]</span></td></tr>
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{{STRUCTURE_2f1n| PDB=2f1n | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CDTB_ECOLX CDTB_ECOLX] Part of the tripartite complex that is required for the CDT activity. CdtB exhibits a DNA-nicking endonuclease activity, and very probably causes DNA damage in intoxicated cells. This damage induces G2/M cell cycle arrest, chromatin fragmentation, cell distention and nucleus enlargement.<ref>PMID:11292766</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f1/2f1n_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2f1n ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Cytolethal distending toxin (CDT) induces cell cycle arrest and apoptosis in eukaryotic cells, which are mediated by the DNA-damaging CdtB subunit. Here we report the first x-ray structure of an isolated CdtB subunit (Escherichia coli-II CdtB, EcCdtB). In conjunction with previous structural and biochemical observations, active site structural comparisons between free and holotoxin-assembled CdtBs suggested that CDT intoxication is contingent upon holotoxin disassembly. Solution NMR structural and 15N relaxation studies of free EcCdtB revealed disorder in the interface with the CdtA and CdtC subunits (residues Gly233-Asp242). Residues Leu186-Thr209 of EcCdtB, which encompasses tandem arginine residues essential for nuclear translocation and intoxication, were also disordered in solution. In stark contrast, nearly identical well defined alpha-helix and beta-strand secondary structures were observed in this region of the free and holotoxin CdtB crystallographic models, suggesting that distinct changes in structural ordering characterize subunit disassembly and nuclear localization factor binding functions.
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===Structure of CdtB, the biologically active subunit of Cytolethal Distending Toxin===
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Differences in crystal and solution structures of the cytolethal distending toxin B subunit: Relevance to nuclear translocation and functional activation.,Hontz JS, Villar-Lecumberri MT, Potter BM, Yoder MD, Dreyfus LA, Laity JH J Biol Chem. 2006 Sep 1;281(35):25365-72. Epub 2006 Jun 28. PMID:16809347<ref>PMID:16809347</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_16809347}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2f1n" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 16809347 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_16809347}}
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__TOC__
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</StructureSection>
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==About this Structure==
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2F1N is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F1N OCA].
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==Reference==
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<ref group="xtra">PMID:16809347</ref><references group="xtra"/>
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[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Dreyfus, L A.]]
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[[Category: Large Structures]]
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[[Category: Hontz, J S.]]
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[[Category: Dreyfus LA]]
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[[Category: Yoder, M D.]]
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[[Category: Hontz JS]]
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[[Category: Cdt]]
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[[Category: Yoder MD]]
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[[Category: Cytolethal distending toxin]]
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[[Category: Dnase i]]
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[[Category: E coli]]
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[[Category: Microbatch]]
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[[Category: Toxin]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 17:18:51 2009''
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Current revision

Structure of CdtB, the biologically active subunit of Cytolethal Distending Toxin

PDB ID 2f1n

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