This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1r5z

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:10, 17 April 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1r5z.png|left|200px]]
 
-
<!--
+
==Crystal Structure of Subunit C of V-ATPase==
-
The line below this paragraph, containing "STRUCTURE_1r5z", creates the "Structure Box" on the page.
+
<StructureSection load='1r5z' size='340' side='right'caption='[[1r5z]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1r5z]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R5Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1R5Z FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r5z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r5z OCA], [https://pdbe.org/1r5z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1r5z RCSB], [https://www.ebi.ac.uk/pdbsum/1r5z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r5z ProSAT]</span></td></tr>
-
{{STRUCTURE_1r5z| PDB=1r5z | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/VATC_THET8 VATC_THET8] Produces ATP from ADP in the presence of a proton gradient across the membrane.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r5/1r5z_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1r5z ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal Structure of Subunit C of V-ATPase===
+
==See Also==
-
 
+
*[[ATPase 3D structures|ATPase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_14684831}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 14684831 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_14684831}}
+
-
 
+
-
==About this Structure==
+
-
1R5Z is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R5Z OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:14684831</ref><references group="xtra"/>
+
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
-
[[Category: Barber, J.]]
+
[[Category: Barber J]]
-
[[Category: Hankamer, B.]]
+
[[Category: Hankamer B]]
-
[[Category: Ikeda, C.]]
+
[[Category: Ikeda C]]
-
[[Category: Imamura, H.]]
+
[[Category: Imamura H]]
-
[[Category: Iwata, M.]]
+
[[Category: Iwata M]]
-
[[Category: Iwata, S.]]
+
[[Category: Iwata S]]
-
[[Category: Makyio, H.]]
+
[[Category: Makyio H]]
-
[[Category: Nagata, K.]]
+
[[Category: Nagata K]]
-
[[Category: Stambouli, E.]]
+
[[Category: Stambouli E]]
-
[[Category: Tamakoshi, M.]]
+
[[Category: Tamakoshi M]]
-
[[Category: Yokoyama, K.]]
+
[[Category: Yokoyama K]]
-
[[Category: Yoshida, M.]]
+
[[Category: Yoshida M]]
-
[[Category: Alpha-helix]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 17:56:22 2009''
+

Current revision

Crystal Structure of Subunit C of V-ATPase

PDB ID 1r5z

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1r5z"
Personal tools