2yyu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:55, 13 March 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2yyu.png|left|200px]]
 
-
<!--
+
==Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus==
-
The line below this paragraph, containing "STRUCTURE_2yyu", creates the "Structure Box" on the page.
+
<StructureSection load='2yyu' size='340' side='right'caption='[[2yyu]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2yyu]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_kaustophilus_HTA426 Geobacillus kaustophilus HTA426]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YYU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YYU FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C5P:CYTIDINE-5-MONOPHOSPHATE'>C5P</scene></td></tr>
-
{{STRUCTURE_2yyu| PDB=2yyu | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yyu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yyu OCA], [https://pdbe.org/2yyu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yyu RCSB], [https://www.ebi.ac.uk/pdbsum/2yyu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yyu ProSAT], [https://www.topsan.org/Proteins/RSGI/2yyu TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PYRF_GEOKA PYRF_GEOKA] Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP) (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yy/2yyu_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yyu ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus===
+
==See Also==
-
 
+
*[[Uridine 5'-monophosphate synthase 3D structures|Uridine 5'-monophosphate synthase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2YYU is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Geobacillus_kaustophilus Geobacillus kaustophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YYU OCA].
+
[[Category: Geobacillus kaustophilus HTA426]]
-
[[Category: Geobacillus kaustophilus]]
+
[[Category: Large Structures]]
-
[[Category: Orotidine-5'-phosphate decarboxylase]]
+
[[Category: Baba S]]
-
[[Category: Baba, S.]]
+
[[Category: Bessho Y]]
-
[[Category: Bessho, Y.]]
+
[[Category: Kanagawa M]]
-
[[Category: Kanagawa, M.]]
+
[[Category: Kawai G]]
-
[[Category: Kawai, G.]]
+
[[Category: Kuramitsu S]]
-
[[Category: Kuramitsu, S.]]
+
[[Category: Nakamura Y]]
-
[[Category: Nakamura, Y.]]
+
[[Category: Sampei G]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Yokoyama S]]
-
[[Category: Sampei, G.]]
+
-
[[Category: Yokoyama, S.]]
+
-
[[Category: Lyase]]
+
-
[[Category: National project on protein structural and functional analyse]]
+
-
[[Category: Nppsfa]]
+
-
[[Category: Riken structural genomics/proteomics initiative]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Tim barrel]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 18:49:52 2009''
+

Current revision

Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus

PDB ID 2yyu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2yyu"
Personal tools