This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1rq0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:24, 14 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1rq0.png|left|200px]]
 
-
<!--
+
==Crystal structure of peptide releasing factor 1==
-
The line below this paragraph, containing "STRUCTURE_1rq0", creates the "Structure Box" on the page.
+
<StructureSection load='1rq0' size='340' side='right'caption='[[1rq0]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1rq0]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RQ0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RQ0 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.65&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rq0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rq0 OCA], [https://pdbe.org/1rq0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rq0 RCSB], [https://www.ebi.ac.uk/pdbsum/1rq0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rq0 ProSAT], [https://www.topsan.org/Proteins/BSGC/1rq0 TOPSAN]</span></td></tr>
-
{{STRUCTURE_1rq0| PDB=1rq0 | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Crystal structure of peptide releasing factor 1===
+
[https://www.uniprot.org/uniprot/RF1_THEMA RF1_THEMA] Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA (By similarity).
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_15312775}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 15312775 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rq/1rq0_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_15312775}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rq0 ConSurf].
-
1RQ0 is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RQ0 OCA].
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:15312775</ref><references group="xtra"/>
+
[[Category: Large Structures]]
[[Category: Thermotoga maritima]]
[[Category: Thermotoga maritima]]
-
[[Category: BSGC, Berkeley Structural Genomics Center.]]
+
[[Category: Brandsen J]]
-
[[Category: Brandsen, J.]]
+
[[Category: Jancarik J]]
-
[[Category: Jancarik, J.]]
+
[[Category: Kim R]]
-
[[Category: Kim, R.]]
+
[[Category: Kim S-H]]
-
[[Category: Kim, S H.]]
+
[[Category: Shin DH]]
-
[[Category: Shin, D H.]]
+
[[Category: Yokota H]]
-
[[Category: Yokota, H.]]
+
-
[[Category: Berkeley structural genomics center]]
+
-
[[Category: Bsgc structure funded by nih]]
+
-
[[Category: Crystal]]
+
-
[[Category: Peptide release factor 1]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Ribosome]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: X-ray]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 18:50:18 2009''
+

Current revision

Crystal structure of peptide releasing factor 1

PDB ID 1rq0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1rq0"
Personal tools