3d27

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{{Seed}}
 
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[[Image:3d27.png|left|200px]]
 
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==E. coli methionine aminopeptidase with Fe inhibitor W29==
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The line below this paragraph, containing "STRUCTURE_3d27", creates the "Structure Box" on the page.
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<StructureSection load='3d27' size='340' side='right'caption='[[3d27]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3d27]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D27 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D27 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=W29:4-(3-ETHYLTHIOPHEN-2-YL)BENZENE-1,2-DIOL'>W29</scene></td></tr>
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{{STRUCTURE_3d27| PDB=3d27 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d27 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d27 OCA], [https://pdbe.org/3d27 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d27 RCSB], [https://www.ebi.ac.uk/pdbsum/3d27 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d27 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/MAP1_ECOLI MAP1_ECOLI] Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed.[HAMAP-Rule:MF_01974]<ref>PMID:20521764</ref> <ref>PMID:3027045</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d2/3d27_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d27 ConSurf].
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<div style="clear:both"></div>
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===E. coli methionine aminopeptidase with Fe inhibitor W29===
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==See Also==
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*[[Aminopeptidase 3D structures|Aminopeptidase 3D structures]]
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== References ==
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<references/>
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The line below this paragraph, {{ABSTRACT_PUBMED_18785729}}, adds the Publication Abstract to the page
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__TOC__
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(as it appears on PubMed at http://www.pubmed.gov), where 18785729 is the PubMed ID number.
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</StructureSection>
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[[Category: Escherichia coli K-12]]
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{{ABSTRACT_PUBMED_18785729}}
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[[Category: Large Structures]]
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[[Category: Chai S]]
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==About this Structure==
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[[Category: He HZ]]
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3D27 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D27 OCA].
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[[Category: Ye QZ]]
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==Reference==
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<ref group="xtra">PMID:18785729</ref><references group="xtra"/>
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[[Category: Escherichia coli]]
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[[Category: Methionyl aminopeptidase]]
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[[Category: Chai, S.]]
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[[Category: He, H Z.]]
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[[Category: Ye, Q Z.]]
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[[Category: Aminopeptidase]]
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[[Category: Cobalt]]
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[[Category: Dinuclear]]
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[[Category: Enzyme-inhibitor complex]]
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[[Category: Hydrolase]]
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[[Category: Iron]]
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[[Category: Manganese]]
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[[Category: Metal-binding]]
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[[Category: Metalloenzyme]]
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[[Category: Peptidase]]
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[[Category: Protease]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 19:07:30 2009''
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Current revision

E. coli methionine aminopeptidase with Fe inhibitor W29

PDB ID 3d27

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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