1z5n

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(New page: 200px<br /><applet load="1z5n" size="450" color="white" frame="true" align="right" spinBox="true" caption="1z5n, resolution 2.10&Aring;" /> '''Crystal structure of...)
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[[Image:1z5n.gif|left|200px]]<br /><applet load="1z5n" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1z5n, resolution 2.10&Aring;" />
 
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'''Crystal structure of MTA/AdoHcy nucleosidase Glu12Gln mutant complexed with 5-methylthioribose and adenine'''<br />
 
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==Overview==
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==Crystal structure of MTA/AdoHcy nucleosidase Glu12Gln mutant complexed with 5-methylthioribose and adenine==
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MTA/AdoHcy nucleosidase (MTAN) irreversibly hydrolyzes the N9-C1' bond in, the nucleosides, 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine, (AdoHcy) to form adenine and the corresponding thioribose. MTAN plays a, vital role in metabolic pathways involving methionine recycling, biological methylation, polyamine biosynthesis, and quorum sensing., Crystal structures of a wild-type (WT) MTAN complexed with glycerol, and, mutant-enzyme and mutant-product complexes have been determined at 2.0A, 2.0A, and 2.1A resolution, respectively. The WT MTAN-glycerol structure, provides a purine-free model and in combination with the previously solved, thioribose-free MTAN-ADE structure, we now have separate apo structures, for both MTAN binding subsites. The purine and thioribose-free states, reveal an extensive enzyme-immobilized water network in their respective, binding subsites. The Asp197Asn MTAN-MTA and Glu12Gln MTAN-MTR.ADE, structures are the first enzyme-substrate and enzyme-product complexes, reported for MTAN, respectively. These structures provide representative, snapshots along the reaction coordinate and allow insight into the, conformational changes of the enzyme and the nucleoside substrate. A, "catalytic movie" detailing substrate binding, catalysis, and product, release is presented.
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<StructureSection load='1z5n' size='340' side='right'caption='[[1z5n]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1z5n]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z5N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Z5N FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADE:ADENINE'>ADE</scene>, <scene name='pdbligand=SR1:5-S-METHYL-5-THIO-ALPHA-D-RIBOFURANOSE'>SR1</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1z5n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z5n OCA], [https://pdbe.org/1z5n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1z5n RCSB], [https://www.ebi.ac.uk/pdbsum/1z5n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1z5n ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/MTNN_ECOLI MTNN_ECOLI] Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively. Can also use 5'-isobutylthioadenosine, 5'-n-butylthioadenosine, S-adenosyl-D-homocysteine, decarboxylated adenosylhomocysteine, deaminated adenosylhomocysteine and S-2-aza-adenosylhomocysteine as substrates.[HAMAP-Rule:MF_01684]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z5/1z5n_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1z5n ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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MTA/AdoHcy nucleosidase (MTAN) irreversibly hydrolyzes the N9-C1' bond in the nucleosides, 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (AdoHcy) to form adenine and the corresponding thioribose. MTAN plays a vital role in metabolic pathways involving methionine recycling, biological methylation, polyamine biosynthesis, and quorum sensing. Crystal structures of a wild-type (WT) MTAN complexed with glycerol, and mutant-enzyme and mutant-product complexes have been determined at 2.0A, 2.0A, and 2.1A resolution, respectively. The WT MTAN-glycerol structure provides a purine-free model and in combination with the previously solved thioribose-free MTAN-ADE structure, we now have separate apo structures for both MTAN binding subsites. The purine and thioribose-free states reveal an extensive enzyme-immobilized water network in their respective binding subsites. The Asp197Asn MTAN-MTA and Glu12Gln MTAN-MTR.ADE structures are the first enzyme-substrate and enzyme-product complexes reported for MTAN, respectively. These structures provide representative snapshots along the reaction coordinate and allow insight into the conformational changes of the enzyme and the nucleoside substrate. A "catalytic movie" detailing substrate binding, catalysis, and product release is presented.
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==About this Structure==
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Structural snapshots of MTA/AdoHcy nucleosidase along the reaction coordinate provide insights into enzyme and nucleoside flexibility during catalysis.,Lee JE, Smith GD, Horvatin C, Huang DJ, Cornell KA, Riscoe MK, Howell PL J Mol Biol. 2005 Sep 23;352(3):559-74. PMID:16109423<ref>PMID:16109423</ref>
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1Z5N is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with SR1 and ADE as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Adenosylhomocysteine_nucleosidase Adenosylhomocysteine nucleosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.9 3.2.2.9] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1Z5N OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Structural snapshots of MTA/AdoHcy nucleosidase along the reaction coordinate provide insights into enzyme and nucleoside flexibility during catalysis., Lee JE, Smith GD, Horvatin C, Huang DJ, Cornell KA, Riscoe MK, Howell PL, J Mol Biol. 2005 Sep 23;352(3):559-74. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16109423 16109423]
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</div>
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[[Category: Adenosylhomocysteine nucleosidase]]
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<div class="pdbe-citations 1z5n" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Cornell, K.A.]]
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[[Category: Cornell KA]]
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[[Category: Horvatin, C.]]
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[[Category: Horvatin C]]
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[[Category: Howell, P.L.]]
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[[Category: Howell PL]]
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[[Category: Huang, D.J.T.]]
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[[Category: Huang DJT]]
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[[Category: Lee, J.E.]]
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[[Category: Lee JE]]
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[[Category: Riscoe, M.K.]]
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[[Category: Riscoe MK]]
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[[Category: Smith, G.D.]]
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[[Category: Smith GD]]
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[[Category: ADE]]
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[[Category: SR1]]
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[[Category: mixed alpha/beta]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 07:15:09 2007''
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Current revision

Crystal structure of MTA/AdoHcy nucleosidase Glu12Gln mutant complexed with 5-methylthioribose and adenine

PDB ID 1z5n

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