This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1cd1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:39, 13 March 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1cd1.png|left|200px]]
 
-
<!--
+
==CD1(MOUSE) ANTIGEN PRESENTING MOLECULE==
-
The line below this paragraph, containing "STRUCTURE_1cd1", creates the "Structure Box" on the page.
+
<StructureSection load='1cd1' size='340' side='right'caption='[[1cd1]], [[Resolution|resolution]] 2.67&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1cd1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CD1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CD1 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.67&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1cd1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cd1 OCA], [https://pdbe.org/1cd1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1cd1 RCSB], [https://www.ebi.ac.uk/pdbsum/1cd1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1cd1 ProSAT]</span></td></tr>
-
{{STRUCTURE_1cd1| PDB=1cd1 | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CD1D1_MOUSE CD1D1_MOUSE] Antigen-presenting protein that binds self and non-self glycolipids and presents them to T-cell receptors on natural killer T-cells.<ref>PMID:11754812</ref> <ref>PMID:16314439</ref> <ref>PMID:16007091</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cd/1cd1_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1cd1 ConSurf].
 +
<div style="clear:both"></div>
-
===CD1(MOUSE) ANTIGEN PRESENTING MOLECULE===
+
==See Also==
-
 
+
*[[Beta-2 microglobulin 3D structures|Beta-2 microglobulin 3D structures]]
-
 
+
*[[CD1|CD1]]
-
<!--
+
== References ==
-
The line below this paragraph, {{ABSTRACT_PUBMED_9219685}}, adds the Publication Abstract to the page
+
<references/>
-
(as it appears on PubMed at http://www.pubmed.gov), where 9219685 is the PubMed ID number.
+
__TOC__
-
-->
+
</StructureSection>
-
{{ABSTRACT_PUBMED_9219685}}
+
[[Category: Large Structures]]
-
 
+
-
==About this Structure==
+
-
1CD1 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CD1 OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:9219685</ref><references group="xtra"/>
+
[[Category: Mus musculus]]
[[Category: Mus musculus]]
-
[[Category: Segelke, B W.]]
+
[[Category: Segelke BW]]
-
[[Category: Wilson, I A.]]
+
[[Category: Wilson IA]]
-
[[Category: Zeng, Z H.]]
+
[[Category: Zeng ZH]]
-
[[Category: Cd1]]
+
-
[[Category: Glycoprotein]]
+
-
[[Category: Immunoglobulin fold]]
+
-
[[Category: Immunology]]
+
-
[[Category: Mhc]]
+
-
[[Category: Signal]]
+
-
[[Category: T-cell]]
+
-
[[Category: Tcr]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 19:49:29 2009''
+

Current revision

CD1(MOUSE) ANTIGEN PRESENTING MOLECULE

PDB ID 1cd1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools