This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1m55

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:39, 14 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1m55.png|left|200px]]
 
-
<!--
+
==Catalytic domain of the Adeno Associated Virus type 5 Rep protein==
-
The line below this paragraph, containing "STRUCTURE_1m55", creates the "Structure Box" on the page.
+
<StructureSection load='1m55' size='340' side='right'caption='[[1m55]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1m55]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Adeno-associated_virus_5 Adeno-associated virus 5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M55 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1M55 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_1m55| PDB=1m55 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1m55 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m55 OCA], [https://pdbe.org/1m55 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1m55 RCSB], [https://www.ebi.ac.uk/pdbsum/1m55 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m55 ProSAT]</span></td></tr>
-
 
+
</table>
-
===Catalytic domain of the Adeno Associated Virus type 5 Rep protein===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q9YJC1_9VIRU Q9YJC1_9VIRU]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_12191478}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 12191478 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m5/1m55_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_12191478}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1M55 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Adeno-associated_virus_-_5 Adeno-associated virus - 5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M55 OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m55 ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:12191478</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Adeno-associated virus - 5]]
+
[[Category: Adeno-associated virus 5]]
-
[[Category: Dyda, F.]]
+
[[Category: Large Structures]]
-
[[Category: Hickman, A B.]]
+
[[Category: Dyda F]]
-
[[Category: Kotin, R M.]]
+
[[Category: Hickman AB]]
-
[[Category: Ronning, D R.]]
+
[[Category: Kotin RM]]
-
[[Category: Adeno-associated virus]]
+
[[Category: Ronning DR]]
-
[[Category: Endonuclease]]
+
-
[[Category: Rep]]
+
-
[[Category: Rolling circle replication]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 20:05:39 2009''
+

Current revision

Catalytic domain of the Adeno Associated Virus type 5 Rep protein

PDB ID 1m55

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1m55"
Personal tools