This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ay0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:14, 14 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2ay0.png|left|200px]]
 
-
<!--
+
==Structure of the Lys9Met mutant of the E. coli Proline Utilization A (PutA) DNA-binding domain.==
-
The line below this paragraph, containing "STRUCTURE_2ay0", creates the "Structure Box" on the page.
+
<StructureSection load='2ay0' size='340' side='right'caption='[[2ay0]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2ay0]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AY0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AY0 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-
{{STRUCTURE_2ay0| PDB=2ay0 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ay0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ay0 OCA], [https://pdbe.org/2ay0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ay0 RCSB], [https://www.ebi.ac.uk/pdbsum/2ay0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ay0 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PUTA_ECOLI PUTA_ECOLI] Oxidizes proline to glutamate for use as a carbon and nitrogen source and also function as a transcriptional repressor of the put operon.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ay/2ay0_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ay0 ConSurf].
 +
<div style="clear:both"></div>
-
===Structure of the Lys9Met mutant of the E. coli Proline Utilization A (PutA) DNA-binding domain.===
+
==See Also==
-
 
+
*[[Proline utilization A|Proline utilization A]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_17001030}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 17001030 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_17001030}}
+
-
 
+
-
==About this Structure==
+
-
2AY0 is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AY0 OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:17001030</ref><references group="xtra"/>
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Becker, D F.]]
+
[[Category: Large Structures]]
-
[[Category: Jenkins, J L.]]
+
[[Category: Becker DF]]
-
[[Category: Larson, J D.]]
+
[[Category: Jenkins JL]]
-
[[Category: Schuermann, J P.]]
+
[[Category: Larson JD]]
-
[[Category: Tanner, J J.]]
+
[[Category: Schuermann JP]]
-
[[Category: Zhou, Y.]]
+
[[Category: Tanner JJ]]
-
[[Category: Dna-binding domain]]
+
[[Category: Zhou Y]]
-
[[Category: Proline catabolism]]
+
-
[[Category: Proline utilization some]]
+
-
[[Category: Puta]]
+
-
[[Category: Ribbon-helix-helix]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 20:24:01 2009''
+

Current revision

Structure of the Lys9Met mutant of the E. coli Proline Utilization A (PutA) DNA-binding domain.

PDB ID 2ay0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2ay0"
Personal tools