This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1dqv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:58, 7 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1dqv.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF SYNAPTOTAGMIN III C2A/C2B==
-
The line below this paragraph, containing "STRUCTURE_1dqv", creates the "Structure Box" on the page.
+
<StructureSection load='1dqv' size='340' side='right'caption='[[1dqv]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1dqv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_rattus Rattus rattus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DQV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DQV FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1dqv| PDB=1dqv | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dqv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dqv OCA], [https://pdbe.org/1dqv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dqv RCSB], [https://www.ebi.ac.uk/pdbsum/1dqv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dqv ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SYT3_RAT SYT3_RAT] May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dq/1dqv_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dqv ConSurf].
 +
<div style="clear:both"></div>
-
===CRYSTAL STRUCTURE OF SYNAPTOTAGMIN III C2A/C2B===
+
==See Also==
-
 
+
*[[Synaptotagmin 3D structures|Synaptotagmin 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_10545502}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 10545502 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_10545502}}
+
-
 
+
-
==About this Structure==
+
-
1DQV is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Rattus_rattus Rattus rattus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DQV OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:10545502</ref><references group="xtra"/>
+
[[Category: Rattus rattus]]
[[Category: Rattus rattus]]
-
[[Category: Brunger, A T.]]
+
[[Category: Brunger AT]]
-
[[Category: Ernst, J A.]]
+
[[Category: Ernst JA]]
-
[[Category: Sutton, R B.]]
+
[[Category: Sutton RB]]
-
[[Category: Beta sandwich]]
+
-
[[Category: C2 domain]]
+
-
[[Category: Calcium ion]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 21:03:39 2009''
+

Current revision

CRYSTAL STRUCTURE OF SYNAPTOTAGMIN III C2A/C2B

PDB ID 1dqv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools