1zgz

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(New page: 200px<br /><applet load="1zgz" size="450" color="white" frame="true" align="right" spinBox="true" caption="1zgz, resolution 1.80&Aring;" /> '''Crystal Structure Of...)
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[[Image:1zgz.gif|left|200px]]<br /><applet load="1zgz" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1zgz, resolution 1.80&Aring;" />
 
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'''Crystal Structure Of The Receiver Domain Of TMAO Respiratory System Response Regulator TorR'''<br />
 
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==Overview==
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==Crystal Structure Of The Receiver Domain Of TMAO Respiratory System Response Regulator TorR==
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Bacterial response regulators are key regulatory proteins that function as, the final elements of so-called two-component signaling systems. The, activities of response regulators in vivo are modulated by phosphorylation, that results from interactions between the response regulator and its, cognate histidine protein kinase. The level of response regulator, phosphorylation, which is regulated by intra-or extracellular signals, sensed by the histidine protein kinase, ultimately determines the output, response that is initiated or carried out by the response regulator. We, have recently hypothesized that in the OmpR/PhoB subfamily of response, regulator transcription factors, this activation involves a common, mechanism of dimerization using a set of highly conserved residues in the, alpha4-beta5-alpha5 face. Here we report the X-ray crystal structures of, the regulatory domains of response regulators TorR (1.8 A), Ca(2+)-bound, KdpE (2.0 A), and Mg(2+)/BeF(3)(-)-bound KdpE (2.2 A), both members of the, OmpR/ PhoB subfamily from Escherichia coli. Both regulatory domains form, symmetric dimers in the asymmetric unit that involve the, alpha4-beta5-alpha5 face. As observed previously in other OmpR/PhoB, response regulators, the dimer interfaces are mediated by highly conserved, residues within this subfamily. These results provide further evidence, that most all response regulators of the OmpR/ PhoB subfamily share a, common mechanism of activation by dimerization.
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<StructureSection load='1zgz' size='340' side='right'caption='[[1zgz]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1zgz]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZGZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZGZ FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zgz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zgz OCA], [https://pdbe.org/1zgz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zgz RCSB], [https://www.ebi.ac.uk/pdbsum/1zgz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zgz ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/TORR_ECOLI TORR_ECOLI] Member of the two-component regulatory system TorS/TorR involved in the anaerobic utilization of trimethylamine-N-oxide (TMAO). Phosphorylated TorR activates the transcription of the torCAD operon by binding to four decameric boxes located in the torCAD promoter. Box1, 2 and 4 contain the DNA sequence 5'-CTGTTCATAT-3' and box3 contains the DNA sequence 5'-CCGTTCATCC-3'. Phosphorylated as well as unphosphorylated TorR negatively regulates its own expression by binding to box1 and 2.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zg/1zgz_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zgz ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Bacterial response regulators are key regulatory proteins that function as the final elements of so-called two-component signaling systems. The activities of response regulators in vivo are modulated by phosphorylation that results from interactions between the response regulator and its cognate histidine protein kinase. The level of response regulator phosphorylation, which is regulated by intra-or extracellular signals sensed by the histidine protein kinase, ultimately determines the output response that is initiated or carried out by the response regulator. We have recently hypothesized that in the OmpR/PhoB subfamily of response regulator transcription factors, this activation involves a common mechanism of dimerization using a set of highly conserved residues in the alpha4-beta5-alpha5 face. Here we report the X-ray crystal structures of the regulatory domains of response regulators TorR (1.8 A), Ca(2+)-bound KdpE (2.0 A), and Mg(2+)/BeF(3)(-)-bound KdpE (2.2 A), both members of the OmpR/ PhoB subfamily from Escherichia coli. Both regulatory domains form symmetric dimers in the asymmetric unit that involve the alpha4-beta5-alpha5 face. As observed previously in other OmpR/PhoB response regulators, the dimer interfaces are mediated by highly conserved residues within this subfamily. These results provide further evidence that most all response regulators of the OmpR/ PhoB subfamily share a common mechanism of activation by dimerization.
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==About this Structure==
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A common dimerization interface in bacterial response regulators KdpE and TorR.,Toro-Roman A, Wu T, Stock AM Protein Sci. 2005 Dec;14(12):3077-88. PMID:16322582<ref>PMID:16322582</ref>
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1ZGZ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with SO4 and GOL as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1ZGZ OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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A common dimerization interface in bacterial response regulators KdpE and TorR., Toro-Roman A, Wu T, Stock AM, Protein Sci. 2005 Dec;14(12):3077-88. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16322582 16322582]
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</div>
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<div class="pdbe-citations 1zgz" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Stock, A.M.]]
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[[Category: Stock AM]]
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[[Category: Toro-Roman, A.]]
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[[Category: Toro-Roman A]]
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[[Category: Wu, T.]]
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[[Category: Wu T]]
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[[Category: GOL]]
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[[Category: SO4]]
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[[Category: doubly wound five-stranded beta-alpha fold]]
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[[Category: gene regulation]]
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[[Category: tmao respiratory system]]
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[[Category: transcription factor]]
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[[Category: two-component system]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 07:26:49 2007''
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Current revision

Crystal Structure Of The Receiver Domain Of TMAO Respiratory System Response Regulator TorR

PDB ID 1zgz

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