This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ds0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:58, 7 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1ds0.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF CLAVAMINATE SYNTHASE==
-
The line below this paragraph, containing "STRUCTURE_1ds0", creates the "Structure Box" on the page.
+
<StructureSection load='1ds0' size='340' side='right'caption='[[1ds0]], [[Resolution|resolution]] 1.63&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ds0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_clavuligerus Streptomyces clavuligerus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DS0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DS0 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.63&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1ds0| PDB=1ds0 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ds0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ds0 OCA], [https://pdbe.org/1ds0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ds0 RCSB], [https://www.ebi.ac.uk/pdbsum/1ds0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ds0 ProSAT]</span></td></tr>
-
 
+
</table>
-
===CRYSTAL STRUCTURE OF CLAVAMINATE SYNTHASE===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/CAS1_STRCL CAS1_STRCL]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_10655615}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 10655615 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ds/1ds0_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_10655615}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1DS0 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_clavuligerus Streptomyces clavuligerus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DS0 OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ds0 ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:10655615</ref><references group="xtra"/>
+
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Streptomyces clavuligerus]]
[[Category: Streptomyces clavuligerus]]
-
[[Category: Baldwin, J E.]]
+
[[Category: Baldwin JE]]
-
[[Category: Harlos, K.]]
+
[[Category: Harlos K]]
-
[[Category: Ren, J.]]
+
[[Category: Ren J]]
-
[[Category: Schofield, C J.]]
+
[[Category: Schofield CJ]]
-
[[Category: Stammers, D K.]]
+
[[Category: Stammers DK]]
-
[[Category: Zhang, Z H.]]
+
[[Category: Zhang ZH]]
-
[[Category: Clavaminate synthase 1]]
+
-
[[Category: Jelly roll]]
+
-
[[Category: Oxygenase]]
+
-
[[Category: Trifunctional enzyme]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 21:37:09 2009''
+

Current revision

CRYSTAL STRUCTURE OF CLAVAMINATE SYNTHASE

PDB ID 1ds0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools