This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1nrf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:28, 13 March 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1nrf.png|left|200px]]
 
-
<!--
+
==C-terminal domain of the Bacillus licheniformis BlaR penicillin-receptor==
-
The line below this paragraph, containing "STRUCTURE_1nrf", creates the "Structure Box" on the page.
+
<StructureSection load='1nrf' size='340' side='right'caption='[[1nrf]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1nrf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_licheniformis Bacillus licheniformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NRF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NRF FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nrf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nrf OCA], [https://pdbe.org/1nrf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nrf RCSB], [https://www.ebi.ac.uk/pdbsum/1nrf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nrf ProSAT]</span></td></tr>
-
{{STRUCTURE_1nrf| PDB=1nrf | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===C-terminal domain of the Bacillus licheniformis BlaR penicillin-receptor===
+
[https://www.uniprot.org/uniprot/BLAR_BACLI BLAR_BACLI] BlaR1 is a potential penicillin-binding protein required for induction of beta-lactamase in Bacillus licheniformis.
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_14596597}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 14596597 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nr/1nrf_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_14596597}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nrf ConSurf].
-
1NRF is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_licheniformis Bacillus licheniformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NRF OCA].
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:14596597</ref><ref group="xtra">PMID:9076730</ref><references group="xtra"/>
+
[[Category: Bacillus licheniformis]]
[[Category: Bacillus licheniformis]]
-
[[Category: Brans, A.]]
+
[[Category: Large Structures]]
-
[[Category: Charlier, P.]]
+
[[Category: Brans A]]
-
[[Category: Columbo, M L.]]
+
[[Category: Charlier P]]
-
[[Category: Fonze, E.]]
+
[[Category: Columbo ML]]
-
[[Category: Frere, J M.]]
+
[[Category: Fonze E]]
-
[[Category: Joris, B.]]
+
[[Category: Frere JM]]
-
[[Category: Kerff, F.]]
+
[[Category: Joris B]]
-
[[Category: Sauvage, E.]]
+
[[Category: Kerff F]]
-
[[Category: Bacillus licheniformi]]
+
[[Category: Sauvage E]]
-
[[Category: Beta-lactamase induction]]
+
-
[[Category: Penicillin-binding protein]]
+
-
[[Category: Penicillin-receptor]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 21:39:57 2009''
+

Current revision

C-terminal domain of the Bacillus licheniformis BlaR penicillin-receptor

PDB ID 1nrf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools