This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bfk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:08, 30 August 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3bfk.png|left|200px]]
 
-
<!--
+
==Crystal structure of Plasmodium falciparum Rab11a in complex with GDP==
-
The line below this paragraph, containing "STRUCTURE_3bfk", creates the "Structure Box" on the page.
+
<StructureSection load='3bfk' size='340' side='right'caption='[[3bfk]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3bfk]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum_3D7 Plasmodium falciparum 3D7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BFK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BFK FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
{{STRUCTURE_3bfk| PDB=3bfk | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bfk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bfk OCA], [https://pdbe.org/3bfk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bfk RCSB], [https://www.ebi.ac.uk/pdbsum/3bfk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bfk ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q76NM4_PLAF7 Q76NM4_PLAF7]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bf/3bfk_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bfk ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of Plasmodium falciparum Rab11a in complex with GDP===
+
==See Also==
-
 
+
*[[Ras-related protein Rab 3D structures|Ras-related protein Rab 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
3BFK is a 5 chains structure of sequences from [http://en.wikipedia.org/wiki/Plasmodium_falciparum_3d7 Plasmodium falciparum 3d7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BFK OCA].
+
[[Category: Large Structures]]
-
[[Category: Plasmodium falciparum 3d7]]
+
[[Category: Plasmodium falciparum 3D7]]
-
[[Category: Small monomeric GTPase]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Arrowsmith, C H.]]
+
[[Category: Bochkarev A]]
-
[[Category: Bochkarev, A.]]
+
[[Category: Edwards AM]]
-
[[Category: Edwards, A M.]]
+
[[Category: Hassanali A]]
-
[[Category: Hassanali, A.]]
+
[[Category: Hui R]]
-
[[Category: Hui, R.]]
+
[[Category: Kozieradzki I]]
-
[[Category: Kozieradzki, I.]]
+
[[Category: Lew J]]
-
[[Category: Lew, J.]]
+
[[Category: Lin L]]
-
[[Category: Lin, L.]]
+
[[Category: Pizarro JC]]
-
[[Category: Pizarro, J C.]]
+
[[Category: Sukumar D]]
-
[[Category: SGC, Structural Genomics Consortium.]]
+
[[Category: Sundstrom M]]
-
[[Category: Sukumar, D.]]
+
[[Category: Weigelt J]]
-
[[Category: Sundstrom, M.]]
+
[[Category: Wernimont AK]]
-
[[Category: Weigelt, J.]]
+
-
[[Category: Wernimont, A K.]]
+
-
[[Category: Gtp-binding]]
+
-
[[Category: Gtpase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Malaria]]
+
-
[[Category: Nucleotide-binding]]
+
-
[[Category: Rab]]
+
-
[[Category: Sgc]]
+
-
[[Category: Structural genomics consortium]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 21:42:16 2009''
+

Current revision

Crystal structure of Plasmodium falciparum Rab11a in complex with GDP

PDB ID 3bfk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3bfk"
Personal tools