1zzf
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="1zzf" size="450" color="white" frame="true" align="right" spinBox="true" caption="1zzf" /> '''The DNA-bound solution structure of HPV-16 E...) |
|||
| (14 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:1zzf.gif|left|200px]]<br /><applet load="1zzf" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1zzf" /> | ||
| - | '''The DNA-bound solution structure of HPV-16 E2 DNA-binding domain'''<br /> | ||
| - | == | + | ==The DNA-bound solution structure of HPV-16 E2 DNA-binding domain== |
| - | + | <StructureSection load='1zzf' size='340' side='right'caption='[[1zzf]]' scene=''> | |
| - | [ | + | == Structural highlights == |
| - | [[ | + | <table><tr><td colspan='2'>[[1zzf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_papillomavirus_type_16 Human papillomavirus type 16]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZZF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZZF FirstGlance]. <br> |
| - | [ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| - | [[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zzf OCA], [https://pdbe.org/1zzf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zzf RCSB], [https://www.ebi.ac.uk/pdbsum/1zzf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zzf ProSAT]</span></td></tr> |
| - | [ | + | </table> |
| - | [[ | + | == Function == |
| - | [ | + | [https://www.uniprot.org/uniprot/VE2_HPV16 VE2_HPV16] Plays an accessory role in initiation of DNA replication. A dimer of E2 interacts with a dimer of E1 in order to improve specificity of E1 DNA binding activity. Once the complex recognizes and binds DNA at specific sites, the E2 dimer is removed from DNA. E2 also regulates viral transcription through binding to the E2RE response element (5'-ACCNNNNNNGGT-3') present in multiple copies in the regulatory regions of the viral genome. Activates or represses transcription depending on E2RE's position with regards to proximal promoter elements including the TATA-box. Repression occurs by sterically hindering the assembly of the transcription initiation complex.<ref>PMID:3033289</ref> <ref>PMID:1326651</ref> <ref>PMID:15681049</ref> |
| - | [[ | + | == Evolutionary Conservation == |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zz/1zzf_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zzf ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | + | ==See Also== | |
| + | *[[Regulatory protein E2|Regulatory protein E2]] | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Human papillomavirus type 16]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Cicero OD]] | ||
| + | [[Category: De Prat-Gay G]] | ||
| + | [[Category: Eliseo T]] | ||
| + | [[Category: Nadra AD]] | ||
| + | [[Category: Paci M]] | ||
Current revision
The DNA-bound solution structure of HPV-16 E2 DNA-binding domain
| |||||||||||
