This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1b5e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:34, 7 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1b5e.png|left|200px]]
 
-
<!--
+
==DCMP HYDROXYMETHYLASE FROM T4==
-
The line below this paragraph, containing "STRUCTURE_1b5e", creates the "Structure Box" on the page.
+
<StructureSection load='1b5e' size='340' side='right'caption='[[1b5e]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1b5e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B5E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1B5E FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DCM:2-DEOXYCYTIDINE-5-MONOPHOSPHATE'>DCM</scene></td></tr>
-
{{STRUCTURE_1b5e| PDB=1b5e | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1b5e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b5e OCA], [https://pdbe.org/1b5e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1b5e RCSB], [https://www.ebi.ac.uk/pdbsum/1b5e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1b5e ProSAT]</span></td></tr>
-
 
+
</table>
-
===DCMP HYDROXYMETHYLASE FROM T4===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/DCHM_BPT4 DCHM_BPT4]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_10064578}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 10064578 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b5/1b5e_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_10064578}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1B5E is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B5E OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1b5e ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:10064578</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Deoxycytidylate 5-hydroxymethyltransferase]]
+
[[Category: Escherichia virus T4]]
-
[[Category: Enterobacteria phage t4]]
+
[[Category: Large Structures]]
-
[[Category: Sohn, S H.]]
+
[[Category: Sohn SH]]
-
[[Category: Song, H K.]]
+
[[Category: Song HK]]
-
[[Category: Suh, S W.]]
+
[[Category: Suh SW]]
-
[[Category: Dntp synthesizing complex]]
+
-
[[Category: Hydroxymethylase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 01:23:25 2009''
+

Current revision

DCMP HYDROXYMETHYLASE FROM T4

PDB ID 1b5e

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1b5e"
Personal tools