2e6u

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:49, 13 March 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2e6u.png|left|200px]]
 
-
<!--
+
==Crystal structure of hypothetical protein PH1109 from Pyrococcus horikoshii==
-
The line below this paragraph, containing "STRUCTURE_2e6u", creates the "Structure Box" on the page.
+
<StructureSection load='2e6u' size='340' side='right'caption='[[2e6u]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2e6u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2czz 2czz]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E6U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2E6U FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=COA:COENZYME+A'>COA</scene></td></tr>
-
{{STRUCTURE_2e6u| PDB=2e6u | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2e6u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e6u OCA], [https://pdbe.org/2e6u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2e6u RCSB], [https://www.ebi.ac.uk/pdbsum/2e6u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2e6u ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of hypothetical protein PH1109 from Pyrococcus horikoshii===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/O58836_PYRHO O58836_PYRHO]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_16041065}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 16041065 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e6/2e6u_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_16041065}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
2E6U is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2czz 2czz]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E6U OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2e6u ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:16041065</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Pyrococcus horikoshii]]
+
[[Category: Large Structures]]
-
[[Category: Kitago, Y.]]
+
[[Category: Pyrococcus horikoshii OT3]]
-
[[Category: Min, Y.]]
+
[[Category: Kitago Y]]
-
[[Category: Tanaka, I.]]
+
[[Category: Min Y]]
-
[[Category: Watanabe, N.]]
+
[[Category: Tanaka I]]
-
[[Category: Coa binding]]
+
[[Category: Watanabe N]]
-
[[Category: Rossmann-like]]
+
-
[[Category: Structural genomics consortium for research on gene expression system]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 01:43:33 2009''
+

Current revision

Crystal structure of hypothetical protein PH1109 from Pyrococcus horikoshii

PDB ID 2e6u

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2e6u"
Personal tools