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2r0f

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{{Seed}}
 
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[[Image:2r0f.png|left|200px]]
 
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==Ligand free structure of fungal lectin CGL3==
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The line below this paragraph, containing "STRUCTURE_2r0f", creates the "Structure Box" on the page.
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<StructureSection load='2r0f' size='340' side='right'caption='[[2r0f]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2r0f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Coprinopsis_cinerea Coprinopsis cinerea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R0F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R0F FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r0f OCA], [https://pdbe.org/2r0f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r0f RCSB], [https://www.ebi.ac.uk/pdbsum/2r0f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r0f ProSAT]</span></td></tr>
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{{STRUCTURE_2r0f| PDB=2r0f | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CGL3_COPCI CGL3_COPCI] Binds complex carbohydrates, such as chitooligosaccharides. Does not bind lactose. May play a role in fruiting body formation.<ref>PMID:18440554</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r0/2r0f_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r0f ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Recent advances in genome sequencing efforts have revealed an abundance of novel putative lectins. Among these, many galectin-related proteins, characterized by many conserved residues but intriguingly lacking critical amino acids, have been found in all corners of the eukaryotic superkingdom. Here we present a structural and biochemical analysis of one representative, the galectin-related lectin CGL3 found in the inky cap mushroom Coprinopsis cinerea. This protein contains all but one conserved residues known to be involved in beta-galactoside binding in galectins. A Trp residue strictly conserved among galectins is changed to an Arg in CGL3 (R81). Accordingly, the galectin-related protein is not able to bind lactose. Screening of a glycan array revealed that CGL3 displays preference for oligomers of beta1-4-linked N-acetyl-glucosamines (chitooligosaccharides) and GalNAc beta 1-4GlcNAc (LacdiNAc). Carbohydrate-binding affinity of this novel lectin was quantified using isothermal titration calorimetry, and its mode of chitooligosaccharide coordination not involving any aromatic amino acid residues was studied by X-ray crystallography. Structural information was used to alter the carbohydrate-binding specificity and substrate affinity of CGL3. The importance of residue R81 in determining the carbohydrate-binding specificity was demonstrated by replacing this Arg with a Trp residue (R81W). This single-amino-acid change led to a lectin that failed to bind chitooligosaccharides but gained lactose binding. Our results demonstrate that, similar to the legume lectin fold, the galectin fold represents a conserved structural framework upon which dramatically altered specificities can be grafted by few alterations in the binding site and that, in consequence, many metazoan galectin-related proteins may represent lectins with novel carbohydrate-binding specificities.
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===Ligand free structure of fungal lectin CGL3===
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Structural basis for chitotetraose coordination by CGL3, a novel galectin-related protein from Coprinopsis cinerea.,Walti MA, Walser PJ, Thore S, Grunler A, Bednar M, Kunzler M, Aebi M J Mol Biol. 2008 May 23;379(1):146-59. Epub 2008 Apr 3. PMID:18440554<ref>PMID:18440554</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_18440554}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2r0f" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 18440554 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18440554}}
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__TOC__
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</StructureSection>
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==About this Structure==
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2R0F is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Coprinopsis_cinerea Coprinopsis cinerea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R0F OCA].
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==Reference==
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<ref group="xtra">PMID:18440554</ref><references group="xtra"/>
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[[Category: Coprinopsis cinerea]]
[[Category: Coprinopsis cinerea]]
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[[Category: Aebi, M.]]
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[[Category: Large Structures]]
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[[Category: Ban, N.]]
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[[Category: Aebi M]]
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[[Category: Gruenler, A.]]
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[[Category: Ban N]]
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[[Category: Kuenzler, M.]]
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[[Category: Gruenler A]]
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[[Category: Thore, S.]]
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[[Category: Kuenzler M]]
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[[Category: Waelti, M A.]]
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[[Category: Thore S]]
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[[Category: Walser, P J.]]
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[[Category: Waelti MA]]
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[[Category: Chitooligosaccharide]]
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[[Category: Walser PJ]]
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[[Category: Galectin-related]]
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[[Category: Lectin]]
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[[Category: Sugar binding protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 02:01:40 2009''
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Current revision

Ligand free structure of fungal lectin CGL3

PDB ID 2r0f

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