This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2e8z

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:37, 25 October 2023) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2e8z.png|left|200px]]
 
-
<!--
+
==Crystal structure of pullulanase type I from Bacillus subtilis str. 168 complexed with alpha-cyclodextrin==
-
The line below this paragraph, containing "STRUCTURE_2e8z", creates the "Structure Box" on the page.
+
<StructureSection load='2e8z' size='340' side='right'caption='[[2e8z]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2e8z]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E8Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2E8Z FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PRD_900015:alpha-cyclodextrin'>PRD_900015</scene></td></tr>
-
{{STRUCTURE_2e8z| PDB=2e8z | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2e8z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e8z OCA], [https://pdbe.org/2e8z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2e8z RCSB], [https://www.ebi.ac.uk/pdbsum/2e8z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2e8z ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PULA_BACSU PULA_BACSU]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e8/2e8z_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2e8z ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of pullulanase type I from Bacillus subtilis str. 168 complexed with alpha-cyclodextrin===
+
==See Also==
-
 
+
*[[Amylase 3D structures|Amylase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2E8Z is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E8Z OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:16582490</ref><references group="xtra"/>
+
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
-
[[Category: Pullulanase]]
+
[[Category: Large Structures]]
-
[[Category: Iwamoto, H.]]
+
[[Category: Iwamoto H]]
-
[[Category: Katsuya, Y.]]
+
[[Category: Katsuya Y]]
-
[[Category: Malle, D.]]
+
[[Category: Malle D]]
-
[[Category: Mikami, B.]]
+
[[Category: Mikami B]]
-
[[Category: Utsumi, S.]]
+
[[Category: Utsumi S]]
-
[[Category: Alpha-amylase-family]]
+
-
[[Category: Alpha-cyclodextrin]]
+
-
[[Category: Beta-alpha-barrel]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Multiple domain]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 02:32:00 2009''
+

Current revision

Crystal structure of pullulanase type I from Bacillus subtilis str. 168 complexed with alpha-cyclodextrin

PDB ID 2e8z

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2e8z"
Personal tools