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1r84

From Proteopedia

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{{Seed}}
 
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[[Image:1r84.png|left|200px]]
 
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==NMR structure of the 13-cis-15-syn retinal in dark_adapted bacteriorhodopsin==
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The line below this paragraph, containing "STRUCTURE_1r84", creates the "Structure Box" on the page.
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<StructureSection load='1r84' size='340' side='right'caption='[[1r84]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1r84]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R84 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1R84 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
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{{STRUCTURE_1r84| PDB=1r84 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r84 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r84 OCA], [https://pdbe.org/1r84 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1r84 RCSB], [https://www.ebi.ac.uk/pdbsum/1r84 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r84 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA] Light-driven proton pump.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r8/1r84_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1r84 ConSurf].
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<div style="clear:both"></div>
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===NMR structure of the 13-cis-15-syn retinal in dark_adapted bacteriorhodopsin===
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==See Also==
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*[[Bacteriorhodopsin 3D structures|Bacteriorhodopsin 3D structures]]
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__TOC__
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<!--
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</StructureSection>
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The line below this paragraph, {{ABSTRACT_PUBMED_12119389}}, adds the Publication Abstract to the page
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(as it appears on PubMed at http://www.pubmed.gov), where 12119389 is the PubMed ID number.
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{{ABSTRACT_PUBMED_12119389}}
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==About this Structure==
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1R84 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R84 OCA].
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==Reference==
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<ref group="xtra">PMID:12119389</ref><references group="xtra"/>
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[[Category: Halobacterium salinarum]]
[[Category: Halobacterium salinarum]]
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[[Category: Kessler, B.]]
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[[Category: Large Structures]]
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[[Category: Kuhne, R.]]
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[[Category: Kessler B]]
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[[Category: Laak, A Ter.]]
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[[Category: Kuhne R]]
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[[Category: Oesterhaelt, D.]]
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[[Category: Oesterhaelt D]]
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[[Category: Oschkinat, H.]]
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[[Category: Oschkinat H]]
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[[Category: Patzelt, H.]]
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[[Category: Patzelt H]]
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[[Category: Schmieder, P.]]
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[[Category: Schmieder P]]
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[[Category: Simon, B.]]
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[[Category: Simon B]]
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[[Category: Haloarchea]]
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[[Category: Ter Laak A]]
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[[Category: Membrane protein]]
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[[Category: Nmr]]
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[[Category: Photoreceptor]]
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[[Category: Proton pump]]
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[[Category: Proton transport]]
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[[Category: Retinal protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 03:35:08 2009''
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Current revision

NMR structure of the 13-cis-15-syn retinal in dark_adapted bacteriorhodopsin

PDB ID 1r84

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OCA

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