1kyi

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{{Seed}}
 
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[[Image:1kyi.png|left|200px]]
 
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==HslUV (H. influenzae)-NLVS Vinyl Sulfone Inhibitor Complex==
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The line below this paragraph, containing "STRUCTURE_1kyi", creates the "Structure Box" on the page.
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<StructureSection load='1kyi' size='340' side='right'caption='[[1kyi]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1kyi]] is a 24 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae_Rd_KW20 Haemophilus influenzae Rd KW20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KYI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KYI FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=LVS:4-IODO-3-NITROPHENYL+ACETYL-LEUCINYL-LEUCINYL-LEUCINYL-VINYLSULFONE'>LVS</scene></td></tr>
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{{STRUCTURE_1kyi| PDB=1kyi | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kyi OCA], [https://pdbe.org/1kyi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kyi RCSB], [https://www.ebi.ac.uk/pdbsum/1kyi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kyi ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/HSLU_HAEIN HSLU_HAEIN] ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ky/1kyi_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kyi ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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On the basis of the structure of a HslUV complex, a mechanism of allosteric activation of the HslV protease, wherein binding of the HslU chaperone propagates a conformational change to the active site cleft of the protease, has been proposed. Here, the 3.1 A X-ray crystallographic structure of Haemophilus influenzae HslUV complexed with a vinyl sulfone inhibitor is described. The inhibitor, which reacts to form a covalent linkage to Thr1 of HslV, binds in an "antiparallel beta" manner, with hydrogen-bond interactions between the peptide backbone of the protease and that of the inhibitor, and with two leucinyl side chains of the inhibitor binding in the S1 and S3 specificity pockets of the protease. Comparison of the structure of the HslUV-inhibitor complex with that of HslV without inhibitor and in the absence of HslU reveals that backbone interactions would correctly position a substrate for cleavage in the HslUV complex, but not in the HslV protease alone, corroborating the proposed mechanism of allosteric activation. This activation mechanism differs from that of the eukaryotic proteasome, for which binding of activators opens a gated channel that controls access of substrates to the protease, but does not perturb the active site environment.
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===HslUV (H. influenzae)-NLVS Vinyl Sulfone Inhibitor Complex===
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Crystal structure of HslUV complexed with a vinyl sulfone inhibitor: corroboration of a proposed mechanism of allosteric activation of HslV by HslU.,Sousa MC, Kessler BM, Overkleeft HS, McKay DB J Mol Biol. 2002 May 3;318(3):779-85. PMID:12054822<ref>PMID:12054822</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 1kyi" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_12054822}}, adds the Publication Abstract to the page
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*[[Heat Shock Protein structures|Heat Shock Protein structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 12054822 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_12054822}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Haemophilus influenzae Rd KW20]]
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1KYI is a 24 chains structure of sequences from [http://en.wikipedia.org/wiki/Haemophilus_influenzae_rd_kw20 Haemophilus influenzae rd kw20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KYI OCA].
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[[Category: Large Structures]]
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[[Category: Kessler BM]]
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==Reference==
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[[Category: McKay DB]]
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<ref group="xtra">PMID:12054822</ref><references group="xtra"/>
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[[Category: Overkleeft HS]]
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[[Category: Haemophilus influenzae rd kw20]]
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[[Category: Sousa MC]]
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[[Category: Kessler, B M.]]
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[[Category: McKay, D B.]]
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[[Category: Overkleeft, H S.]]
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[[Category: Sousa, M C.]]
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[[Category: Aaa-protein]]
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[[Category: Atp-dependent chaperone]]
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[[Category: Clp/hsp100]]
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[[Category: Prokaryotic proteasome]]
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[[Category: Protease]]
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[[Category: Vinyl sulfone inhibitor]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 03:39:10 2009''
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Current revision

HslUV (H. influenzae)-NLVS Vinyl Sulfone Inhibitor Complex

PDB ID 1kyi

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