1qvy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:05, 16 August 2023) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1qvy.png|left|200px]]
 
-
<!--
+
==Crystal structure of RhoGDI K(199,200)R double mutant==
-
The line below this paragraph, containing "STRUCTURE_1qvy", creates the "Structure Box" on the page.
+
<StructureSection load='1qvy' size='340' side='right'caption='[[1qvy]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1qvy]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QVY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QVY FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1qvy| PDB=1qvy | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qvy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qvy OCA], [https://pdbe.org/1qvy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qvy RCSB], [https://www.ebi.ac.uk/pdbsum/1qvy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qvy ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/GDIR1_HUMAN GDIR1_HUMAN] Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them. In glioma cells, inhibits cell migration and invasion by mediating the signals of SEMA5A and PLXNB3 that lead to inactivation of RAC1 (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qv/1qvy_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qvy ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The potential of rational surface mutagenesis for enhanced protein crystallization is being probed in an ongoing effort. In previous work, it was hypothesized that residues with high conformational entropy such as Glu and Lys are suitable targets for surface mutagenesis, as they are rarely incorporated in crystal contacts or protein-protein interfaces. Previous experiments using Lys--&gt;Ala, Glu--&gt;Ala and Glu--&gt;Asp mutants confirmed that mutated proteins were more likely to crystallize. In the present paper, the usefulness of Lys--&gt;Arg mutations is studied. Several mutations of the globular domain of human RhoGDI were generated, including the single mutants K105R, K113R, K127R, K138R and K141R, the double mutants K(98,99)R and K(199,200)R and the triple mutants K(98,99,105)R and K(135,138,141)R. It is shown that Lys--&gt;Arg mutants are more likely to crystallize than the wild-type protein, although not as likely as Lys--&gt;Ala mutants. Out of the nine mutants tested, five produced diffracting crystals, including the K(199,200)R double mutant, which crystallized in a new space group and exceeded by approximately 1.0 A the resolution of the diffraction of the wild-type crystal. Major crystal contacts in the new lattice were created by the mutated epitope.
-
===Crystal structure of RhoGDI K(199,200)R double mutant===
+
The impact of Lys--&gt;Arg surface mutations on the crystallization of the globular domain of RhoGDI.,Czepas J, Devedjiev Y, Krowarsch D, Derewenda U, Otlewski J, Derewenda ZS Acta Crystallogr D Biol Crystallogr. 2004 Feb;60(Pt 2):275-80. Epub 2004, Jan 23. PMID:14747703<ref>PMID:14747703</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 1qvy" style="background-color:#fffaf0;"></div>
-
<!--
+
==See Also==
-
The line below this paragraph, {{ABSTRACT_PUBMED_14747703}}, adds the Publication Abstract to the page
+
*[[Guanine nucleotide dissociation inhibitor|Guanine nucleotide dissociation inhibitor]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 14747703 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_14747703}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
-
1QVY is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QVY OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:14747703</ref><references group="xtra"/>
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Czepas, J.]]
+
[[Category: Large Structures]]
-
[[Category: Derewenda, U.]]
+
[[Category: Czepas J]]
-
[[Category: Derewenda, Z S.]]
+
[[Category: Derewenda U]]
-
[[Category: Devedjiev, Y.]]
+
[[Category: Derewenda ZS]]
-
[[Category: Krowarsh, D.]]
+
[[Category: Devedjiev Y]]
-
[[Category: High resolution]]
+
[[Category: Krowarsh D]]
-
[[Category: Protein crystallization]]
+
-
[[Category: Rational surface mutagenesis]]
+
-
[[Category: Rhogdi]]
+
-
[[Category: X-ray diffraction]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 03:57:17 2009''
+

Current revision

Crystal structure of RhoGDI K(199,200)R double mutant

PDB ID 1qvy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools