1sv2

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{{Seed}}
 
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[[Image:1sv2.png|left|200px]]
 
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==Crystal Structure of Peptide Deformylase from Leptospira Interrogans (LiPDF) at pH7.5==
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The line below this paragraph, containing "STRUCTURE_1sv2", creates the "Structure Box" on the page.
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<StructureSection load='1sv2' size='340' side='right'caption='[[1sv2]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1sv2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Leptospira_interrogans Leptospira interrogans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SV2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SV2 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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{{STRUCTURE_1sv2| PDB=1sv2 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sv2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sv2 OCA], [https://pdbe.org/1sv2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sv2 RCSB], [https://www.ebi.ac.uk/pdbsum/1sv2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sv2 ProSAT]</span></td></tr>
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</table>
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===Crystal Structure of Peptide Deformylase from Leptospira Interrogans (LiPDF) at pH7.5===
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== Function ==
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[https://www.uniprot.org/uniprot/DEF_LEPIN DEF_LEPIN] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).[HAMAP-Rule:MF_00163]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_16239225}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 16239225 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sv/1sv2_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_16239225}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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1SV2 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Leptospira_interrogans Leptospira interrogans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SV2 OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sv2 ConSurf].
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<div style="clear:both"></div>
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==Reference==
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__TOC__
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<ref group="xtra">PMID:16239225</ref><references group="xtra"/>
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Leptospira interrogans]]
[[Category: Leptospira interrogans]]
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[[Category: Peptide deformylase]]
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[[Category: Gong W]]
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[[Category: Gong, W.]]
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[[Category: Li Y]]
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[[Category: Li, Y.]]
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[[Category: Song X]]
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[[Category: Song, X.]]
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[[Category: Zhou Z]]
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[[Category: Zhou, Z.]]
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[[Category: Closed conformation]]
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[[Category: Dimer]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 04:04:30 2009''
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Current revision

Crystal Structure of Peptide Deformylase from Leptospira Interrogans (LiPDF) at pH7.5

PDB ID 1sv2

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