3c6r
From Proteopedia
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- | {{Seed}} | ||
- | [[Image:3c6r.png|left|200px]] | ||
- | + | ==Low pH Immature Dengue Virus== | |
- | + | <SX load='3c6r' size='340' side='right' viewer='molstar' caption='[[3c6r]], [[Resolution|resolution]] 25.00Å' scene=''> | |
- | + | == Structural highlights == | |
- | + | <table><tr><td colspan='2'>[[3c6r]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Dengue_virus_2_Thailand/PUO-218/1980 Dengue virus 2 Thailand/PUO-218/1980]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C6R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C6R FirstGlance]. <br> | |
- | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 25Å</td></tr> | |
- | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c6r OCA], [https://pdbe.org/3c6r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c6r RCSB], [https://www.ebi.ac.uk/pdbsum/3c6r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c6r ProSAT]</span></td></tr> | |
- | + | </table> | |
- | + | == Function == | |
- | + | [https://www.uniprot.org/uniprot/POLG_DEN2U POLG_DEN2U] prM acts as a chaperone for envelope protein E during intracellular virion assembly by masking and inactivating envelope protein E fusion peptide. prM is matured in the last step of virion assembly, presumably to avoid catastrophic activation of the viral fusion peptide induced by the acidic pH of the trans-Golgi network. After cleavage by host furin, the pr peptide is released in the extracellular medium and small envelope protein M and envelope protein E homodimers are dissociated (By similarity). Envelope protein E binding to host cell surface receptor is followed by virus internalization through clathrin-mediated endocytosis. Envelope protein E is subsequently involved in membrane fusion between virion and host late endosomes. Synthesized as a homodimer with prM which acts as a chaperone for envelope protein E. After cleavage of prM, envelope protein E dissociate from small envelope protein M and homodimerizes (By similarity). Non-structural protein 1 is involved in virus replication and regulation of the innate immune response. Soluble and membrane-associated NS1 may activate human complement and induce host vascular leakage. This effect might explain the clinical manifestations of dengue hemorrhagic fever and dengue shock syndrome (By similarity). | |
- | + | == Evolutionary Conservation == | |
- | + | [[Image:Consurf_key_small.gif|200px|right]] | |
- | < | + | Check<jmol> |
- | + | <jmolCheckbox> | |
- | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c6/3c6r_consurf.spt"</scriptWhenChecked> | |
- | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |
- | + | <text>to colour the structure by Evolutionary Conservation</text> | |
- | + | </jmolCheckbox> | |
- | == | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c6r ConSurf]. |
- | + | <div style="clear:both"></div> | |
- | + | __TOC__ | |
- | + | </SX> | |
- | < | + | [[Category: Dengue virus 2 Thailand/PUO-218/1980]] |
- | [[ | + | [[Category: Large Structures]] |
- | [ | + | [[Category: Chen J]] |
- | [ | + | [[Category: Chipman PR]] |
- | [ | + | [[Category: Holdway HA]] |
- | [ | + | [[Category: Kostyuchenko VA]] |
- | [ | + | [[Category: Kuhn RJ]] |
- | + | [[Category: Li L]] | |
- | [ | + | [[Category: Rossmann MG]] |
- | [[ | + | [[Category: Yu I]] |
- | [ | + | [[Category: Zhang W]] |
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Current revision
Low pH Immature Dengue Virus
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