3c6r

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{{Seed}}
 
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[[Image:3c6r.png|left|200px]]
 
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==Low pH Immature Dengue Virus==
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The line below this paragraph, containing "STRUCTURE_3c6r", creates the "Structure Box" on the page.
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<SX load='3c6r' size='340' side='right' viewer='molstar' caption='[[3c6r]], [[Resolution|resolution]] 25.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3c6r]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Dengue_virus_2_Thailand/PUO-218/1980 Dengue virus 2 Thailand/PUO-218/1980]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C6R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C6R FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 25&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c6r OCA], [https://pdbe.org/3c6r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c6r RCSB], [https://www.ebi.ac.uk/pdbsum/3c6r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c6r ProSAT]</span></td></tr>
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{{STRUCTURE_3c6r| PDB=3c6r | SCENE= }}
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</table>
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== Function ==
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===Low pH Immature Dengue Virus===
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[https://www.uniprot.org/uniprot/POLG_DEN2U POLG_DEN2U] prM acts as a chaperone for envelope protein E during intracellular virion assembly by masking and inactivating envelope protein E fusion peptide. prM is matured in the last step of virion assembly, presumably to avoid catastrophic activation of the viral fusion peptide induced by the acidic pH of the trans-Golgi network. After cleavage by host furin, the pr peptide is released in the extracellular medium and small envelope protein M and envelope protein E homodimers are dissociated (By similarity). Envelope protein E binding to host cell surface receptor is followed by virus internalization through clathrin-mediated endocytosis. Envelope protein E is subsequently involved in membrane fusion between virion and host late endosomes. Synthesized as a homodimer with prM which acts as a chaperone for envelope protein E. After cleavage of prM, envelope protein E dissociate from small envelope protein M and homodimerizes (By similarity). Non-structural protein 1 is involved in virus replication and regulation of the innate immune response. Soluble and membrane-associated NS1 may activate human complement and induce host vascular leakage. This effect might explain the clinical manifestations of dengue hemorrhagic fever and dengue shock syndrome (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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The line below this paragraph, {{ABSTRACT_PUBMED_18369148}}, adds the Publication Abstract to the page
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<jmolCheckbox>
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(as it appears on PubMed at http://www.pubmed.gov), where 18369148 is the PubMed ID number.
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c6/3c6r_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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{{ABSTRACT_PUBMED_18369148}}
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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==About this Structure==
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c6r ConSurf].
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3C6R is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Dengue_virus_2 Dengue virus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C6R OCA].
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<div style="clear:both"></div>
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__TOC__
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==Reference==
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</SX>
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<ref group="xtra">PMID:18369148</ref><references group="xtra"/>
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[[Category: Dengue virus 2 Thailand/PUO-218/1980]]
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[[Category: Dengue virus 2]]
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[[Category: Large Structures]]
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[[Category: Chen, J.]]
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[[Category: Chen J]]
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[[Category: Chipman, P R.]]
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[[Category: Chipman PR]]
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[[Category: Holdway, H A.]]
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[[Category: Holdway HA]]
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[[Category: Kostyuchenko, V A.]]
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[[Category: Kostyuchenko VA]]
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[[Category: Kuhn, R J.]]
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[[Category: Kuhn RJ]]
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[[Category: Li, L.]]
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[[Category: Li L]]
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[[Category: Rossmann, M G.]]
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[[Category: Rossmann MG]]
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[[Category: Yu, I.]]
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[[Category: Yu I]]
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[[Category: Zhang, W.]]
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[[Category: Zhang W]]
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[[Category: Capsid protein]]
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[[Category: Cleavage on pair of basic residue]]
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[[Category: Core protein]]
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[[Category: Dengue]]
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[[Category: Endoplasmic reticulum]]
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[[Category: Envelope protein]]
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[[Category: Glycoprotein]]
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[[Category: Icosahedral virus]]
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[[Category: Immature]]
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[[Category: Membrane]]
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[[Category: Prm]]
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[[Category: Secreted]]
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[[Category: Transmembrane]]
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[[Category: Virion]]
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[[Category: Virus]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 04:48:57 2009''
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Current revision

Low pH Immature Dengue Virus

3c6r, resolution 25.00Å

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