1lyc

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{{Seed}}
 
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[[Image:1lyc.png|left|200px]]
 
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==The impact of the physical and chemical enviroment on the molecular structure of Coprinus cinereus peroxidase==
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The line below this paragraph, containing "STRUCTURE_1lyc", creates the "Structure Box" on the page.
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<StructureSection load='1lyc' size='340' side='right'caption='[[1lyc]], [[Resolution|resolution]] 1.57&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1lyc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Coprinopsis_cinerea Coprinopsis cinerea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LYC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LYC FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.57&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
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{{STRUCTURE_1lyc| PDB=1lyc | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lyc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lyc OCA], [https://pdbe.org/1lyc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lyc RCSB], [https://www.ebi.ac.uk/pdbsum/1lyc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lyc ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PER_COPCI PER_COPCI]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ly/1lyc_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lyc ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The structure of the peroxidase from Coprinus cinereus (CiP) has been determined in three different space groups and crystalline environments. Two of these are of the recombinant glycosylated form (rCiP), which crystallized in space groups P2(1)2(1)2(1) and C2. The third crystal form was obtained from a variant of CiP in which the glycosylation sites have been removed (rCiPON). It crystallizes in space group P2(1) with beta approximately 90 degrees; the structure was determined from room-temperature data and low-temperature data obtained from twinned crystals. Two independent molecules of CiP related by non-crystallographic symmetry are contained in the three crystal forms. The packing in the two structures of the glycosylated form of rCiP is closely related, but differs from the packing in the unglycosylated rCiPON. A database search based on small-molecule porphinato iron (III) complexes has been performed and related to observations of the spin states and coordination numbers of the iron ion. The room-temperature structures of CiP and one structure of the almost identical peroxidase from Arthromyces ramosus (ARP) have been used to identify 66 conserved water molecules and to assign a structural role to most of them.
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===The impact of the physical and chemical enviroment on the molecular structure of Coprinus cinereus peroxidase===
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Impact of the physical and chemical environment on the molecular structure of Coprinus cinereus peroxidase.,Houborg K, Harris P, Petersen J, Rowland P, Poulsen JC, Schneider P, Vind J, Larsen S Acta Crystallogr D Biol Crystallogr. 2003 Jun;59(Pt 6):989-96. Epub 2003, May 23. PMID:12777760<ref>PMID:12777760</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_12777760}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1lyc" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 12777760 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_12777760}}
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__TOC__
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</StructureSection>
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==About this Structure==
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1LYC is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Coprinopsis_cinerea Coprinopsis cinerea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LYC OCA].
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==Reference==
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<ref group="xtra">PMID:12777760</ref><references group="xtra"/>
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[[Category: Coprinopsis cinerea]]
[[Category: Coprinopsis cinerea]]
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[[Category: Peroxidase]]
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[[Category: Large Structures]]
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[[Category: Harris, P.]]
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[[Category: Harris P]]
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[[Category: Houborg, K.]]
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[[Category: Houborg K]]
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[[Category: Larsen, S.]]
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[[Category: Larsen S]]
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[[Category: Petersen, J F.W.]]
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[[Category: Petersen JFW]]
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[[Category: Poulsen, J C.N.]]
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[[Category: Poulsen J-CN]]
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[[Category: Rowland, P.]]
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[[Category: Rowland P]]
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[[Category: Schneider, P.]]
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[[Category: Schneider P]]
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[[Category: Vind, J.]]
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[[Category: Vind J]]
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[[Category: Coprinus cinereus]]
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[[Category: Mutant]]
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[[Category: Peroxidase]]
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[[Category: Thermostability]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 05:43:57 2009''
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Current revision

The impact of the physical and chemical enviroment on the molecular structure of Coprinus cinereus peroxidase

PDB ID 1lyc

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