2rnr

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{{Seed}}
 
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[[Image:2rnr.png|left|200px]]
 
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==Solution structure of the complex between TFIIE alpha C-terminal acidic domain and TFIIH p62 PH domain==
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The line below this paragraph, containing "STRUCTURE_2rnr", creates the "Structure Box" on the page.
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<StructureSection load='2rnr' size='340' side='right'caption='[[2rnr]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2rnr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RNR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RNR FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rnr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rnr OCA], [https://pdbe.org/2rnr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rnr RCSB], [https://www.ebi.ac.uk/pdbsum/2rnr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rnr ProSAT]</span></td></tr>
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{{STRUCTURE_2rnr| PDB=2rnr | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/T2EA_HUMAN T2EA_HUMAN] Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rn/2rnr_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rnr ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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RNA polymerase II and general transcription factors (GTFs) assemble on a promoter to form a transcription preinitiation complex (PIC). Among the GTFs, TFIIE recruits TFIIH to complete the PIC formation and regulates enzymatic activities of TFIIH. However, the mode of binding between TFIIE and TFIIH is poorly understood. Here, we demonstrate the specific binding of the C-terminal acidic domain (AC-D) of the human TFIIEalpha subunit to the pleckstrin homology domain (PH-D) of the human TFIIH p62 subunit and describe the solution structures of the free and PH-D-bound forms of AC-D. Although the flexible N-terminal acidic tail from AC-D wraps around PH-D, the core domain of AC-D also interacts with PH-D. AC-D employs an entirely novel binding mode, which differs from the amphipathic helix method used by many transcriptional activators. So the binding surface between PH-D and AC-D is much broader than the specific binding surface between PH-D and the p53 acidic fragments. From our in vitro studies, we demonstrate that this interaction could be a switch to replace p53 with TFIIE on TFIIH in transcription.
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===Solution structure of the complex between TFIIE alpha C-terminal acidic domain and TFIIH p62 PH domain===
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Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH.,Okuda M, Tanaka A, Satoh M, Mizuta S, Takazawa M, Ohkuma Y, Nishimura Y EMBO J. 2008 Apr 9;27(7):1161-71. Epub 2008 Mar 20. PMID:18354501<ref>PMID:18354501</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2rnr" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_18354501}}, adds the Publication Abstract to the page
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*[[Transcription initiation factors 3D structures|Transcription initiation factors 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 18354501 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18354501}}
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__TOC__
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</StructureSection>
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==About this Structure==
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2RNR is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RNR OCA].
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==Reference==
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<ref group="xtra">PMID:18354501</ref><references group="xtra"/>
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Nishimura, Y.]]
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[[Category: Large Structures]]
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[[Category: Okuda, M.]]
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[[Category: Nishimura Y]]
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[[Category: Acidic domain]]
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[[Category: Okuda M]]
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[[Category: Dna damage]]
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[[Category: Dna repair]]
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[[Category: General transcription factor]]
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[[Category: Human tfiie alpha]]
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[[Category: Human tfiih p62]]
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[[Category: Ph domain]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 06:23:29 2009''
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Current revision

Solution structure of the complex between TFIIE alpha C-terminal acidic domain and TFIIH p62 PH domain

PDB ID 2rnr

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