This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1mqe

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:47, 14 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1mqe.png|left|200px]]
 
-
<!--
+
==Structure of the MT-ADPRase in complex with gadolidium and ADP-ribose, a Nudix enzyme==
-
The line below this paragraph, containing "STRUCTURE_1mqe", creates the "Structure Box" on the page.
+
<StructureSection load='1mqe' size='340' side='right'caption='[[1mqe]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1mqe]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MQE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MQE FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=APR:ADENOSINE-5-DIPHOSPHORIBOSE'>APR</scene>, <scene name='pdbligand=GD3:GADOLINIUM+ION'>GD3</scene></td></tr>
-
{{STRUCTURE_1mqe| PDB=1mqe | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mqe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mqe OCA], [https://pdbe.org/1mqe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mqe RCSB], [https://www.ebi.ac.uk/pdbsum/1mqe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mqe ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/O33199_MYCTO O33199_MYCTO]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mq/1mqe_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mqe ConSurf].
 +
<div style="clear:both"></div>
-
===Structure of the MT-ADPRase in complex with gadolidium and ADP-ribose, a Nudix enzyme===
+
==See Also==
-
 
+
*[[ADP-ribose pyrophosphatase 3D structures|ADP-ribose pyrophosphatase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_12906832}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 12906832 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_12906832}}
+
-
 
+
-
==About this Structure==
+
-
1MQE is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MQE OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:12906832</ref><references group="xtra"/>
+
-
[[Category: ADP-ribose diphosphatase]]
+
[[Category: Mycobacterium tuberculosis]]
[[Category: Mycobacterium tuberculosis]]
-
[[Category: Amzel, L M.]]
+
[[Category: Amzel LM]]
-
[[Category: Bianchet, M A.]]
+
[[Category: Bianchet MA]]
-
[[Category: Cunningham, J E.]]
+
[[Category: Cunningham JE]]
-
[[Category: Gabelli, S B.]]
+
[[Category: Gabelli SB]]
-
[[Category: Handley, S F.O.]]
+
[[Category: Kang L-W]]
-
[[Category: Kang, L W.]]
+
[[Category: O'Handley SF]]
-
[[Category: Adpr]]
+
-
[[Category: Mycobacterium tuberculosis]]
+
-
[[Category: Nudix hydrolase]]
+
-
[[Category: Rv1700]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 06:31:53 2009''
+

Current revision

Structure of the MT-ADPRase in complex with gadolidium and ADP-ribose, a Nudix enzyme

PDB ID 1mqe

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1mqe"
Personal tools