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2ayd
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2ayd" size="450" color="white" frame="true" align="right" spinBox="true" caption="2ayd, resolution 1.600Å" /> '''Crystal Structure o...) |
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| - | [[Image:2ayd.jpg|left|200px]]<br /><applet load="2ayd" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2ayd, resolution 1.600Å" /> | ||
| - | '''Crystal Structure of the C-terminal WRKY domainof AtWRKY1, an SA-induced and partially NPR1-dependent transcription factor'''<br /> | ||
| - | == | + | ==Crystal Structure of the C-terminal WRKY domainof AtWRKY1, an SA-induced and partially NPR1-dependent transcription factor== |
| - | + | <StructureSection load='2ayd' size='340' side='right'caption='[[2ayd]], [[Resolution|resolution]] 1.60Å' scene=''> | |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2ayd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AYD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AYD FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SIN:SUCCINIC+ACID'>SIN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ayd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ayd OCA], [https://pdbe.org/2ayd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ayd RCSB], [https://www.ebi.ac.uk/pdbsum/2ayd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ayd ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/WRKY1_ARATH WRKY1_ARATH] Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ay/2ayd_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ayd ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Arabidopsis thaliana]] | [[Category: Arabidopsis thaliana]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Duan | + | [[Category: Duan MR]] |
| - | [[Category: Li | + | [[Category: Li Y]] |
| - | [[Category: Nan | + | [[Category: Nan J]] |
| - | [[Category: Su | + | [[Category: Su XD]] |
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Current revision
Crystal Structure of the C-terminal WRKY domainof AtWRKY1, an SA-induced and partially NPR1-dependent transcription factor
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Categories: Arabidopsis thaliana | Large Structures | Duan MR | Li Y | Nan J | Su XD
