This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2d4y

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:46, 13 March 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2d4y.png|left|200px]]
 
-
<!--
+
==Crystal structure of a 49K fragment of HAP1 (FlgK)==
-
The line below this paragraph, containing "STRUCTURE_2d4y", creates the "Structure Box" on the page.
+
<StructureSection load='2d4y' size='340' side='right'caption='[[2d4y]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2d4y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D4Y FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d4y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d4y OCA], [https://pdbe.org/2d4y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d4y RCSB], [https://www.ebi.ac.uk/pdbsum/2d4y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d4y ProSAT]</span></td></tr>
-
{{STRUCTURE_2d4y| PDB=2d4y | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/FLGK_SALTY FLGK_SALTY]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d4/2d4y_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d4y ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of a 49K fragment of HAP1 (FlgK)===
+
==See Also==
-
 
+
*[[Flagellar protein 3D structures|Flagellar protein 3D structures]]
-
 
+
*[[Flagellar proteins|Flagellar proteins]]
-
==About this Structure==
+
__TOC__
-
2D4Y is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4Y OCA].
+
</StructureSection>
-
[[Category: Salmonella typhimurium]]
+
[[Category: Large Structures]]
-
[[Category: Imada, K.]]
+
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
-
[[Category: Matsunami, H.]]
+
[[Category: Imada K]]
-
[[Category: Nagashima, S.]]
+
[[Category: Matsunami H]]
-
[[Category: Namba, K.]]
+
[[Category: Nagashima S]]
-
[[Category: Samatey, A F.]]
+
[[Category: Namba K]]
-
[[Category: Alpha-helical bundle]]
+
[[Category: Samatey AF]]
-
[[Category: Complex all-beta fold]]
+
-
[[Category: Multi-domain protein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 06:40:58 2009''
+

Current revision

Crystal structure of a 49K fragment of HAP1 (FlgK)

PDB ID 2d4y

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools