1x9r

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{{Seed}}
 
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[[Image:1x9r.png|left|200px]]
 
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==Umecyanin from Horse Raddish- Crystal Structure of the oxidised form==
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The line below this paragraph, containing "STRUCTURE_1x9r", creates the "Structure Box" on the page.
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<StructureSection load='1x9r' size='340' side='right'caption='[[1x9r]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1x9r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Armoracia_rusticana Armoracia rusticana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X9R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X9R FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
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{{STRUCTURE_1x9r| PDB=1x9r | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x9r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x9r OCA], [https://pdbe.org/1x9r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x9r RCSB], [https://www.ebi.ac.uk/pdbsum/1x9r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x9r ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/UMEC_ARMRU UMEC_ARMRU] Not yet known.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x9/1x9r_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1x9r ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Umecyanin (UMC) is a type 1 copper-containing protein which originates from horseradish roots and belongs to the stellacyanin subclass of the phytocyanins, a ubiquitous family of plant cupredoxins. The crystal structures of Cu(II) and Cu(I) UMC have been determined at 1.9 and 1.8 A, respectively. The protein has an overall fold similar to those of other phytocyanins. At the active site the cupric ion is coordinated by the N(delta1) atoms of His44 and His90, the S(gamma) of Cys85, and the O(epsilon)(1) of Gln95 in a distorted tetrahedral geometry. Both His ligands are solvent exposed and are surrounded by nonpolar and polar side chains on the protein surface. Thus, UMC does not possess a distinct hydrophobic patch close to the active site in contrast to almost all other cupredoxins. UMC has a large surface acidic patch situated approximately 10-30 A from the active site. The structure of Cu(I) UMC is the first determined for a reduced phytocyanin and demonstrates that the coordination environment of the cuprous ion is more trigonal pyramidal. This subtle change in geometry is primarily due to the Cu-N(delta1)(His44) and Cu-O(epsilon1)(Gln95) bond lengths increasing from 2.0 and 2.3 A in Cu(II) UMC to 2.2 and 2.5 A, respectively, in the reduced form, as a consequence of slight rotations of the His44 and Gln95 side chains. The limited structural changes upon redox interconversion at the active site of this stellacyanin are analogous to those observed in a typical type 1 copper site with an axial Met ligand and along with its surface features suggest a role for UMC in interprotein electron transfer.
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===Umecyanin from Horse Raddish- Crystal Structure of the oxidised form===
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Crystal structures of oxidized and reduced stellacyanin from horseradish roots.,Koch M, Velarde M, Harrison MD, Echt S, Fischer M, Messerschmidt A, Dennison C J Am Chem Soc. 2005 Jan 12;127(1):158-66. PMID:15631465<ref>PMID:15631465</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_15631465}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1x9r" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 15631465 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_15631465}}
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__TOC__
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</StructureSection>
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==About this Structure==
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1X9R is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Armoracia_rusticana Armoracia rusticana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X9R OCA].
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==Reference==
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<ref group="xtra">PMID:15631465</ref><references group="xtra"/>
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[[Category: Armoracia rusticana]]
[[Category: Armoracia rusticana]]
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[[Category: Dennison, C.]]
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[[Category: Large Structures]]
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[[Category: Echt, S.]]
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[[Category: Dennison C]]
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[[Category: Fischer, M.]]
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[[Category: Echt S]]
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[[Category: Harrison, M D.]]
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[[Category: Fischer M]]
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[[Category: Koch, M.]]
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[[Category: Harrison MD]]
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[[Category: Messerschmidt, A.]]
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[[Category: Koch M]]
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[[Category: Velarde, M.]]
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[[Category: Messerschmidt A]]
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[[Category: Beta barrel]]
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[[Category: Velarde M]]
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[[Category: Copper binding site]]
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[[Category: Cupredoxin]]
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[[Category: Phytocyanin]]
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[[Category: Umecyanin]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 07:36:10 2009''
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Current revision

Umecyanin from Horse Raddish- Crystal Structure of the oxidised form

PDB ID 1x9r

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