This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2d7y

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:34, 22 May 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2d7y.png|left|200px]]
 
-
<!--
+
==Aspartate Aminotransferase Mutant MA==
-
The line below this paragraph, containing "STRUCTURE_2d7y", creates the "Structure Box" on the page.
+
<StructureSection load='2d7y' size='340' side='right'caption='[[2d7y]], [[Resolution|resolution]] 2.66&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2d7y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D7Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D7Y FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.66&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
-
{{STRUCTURE_2d7y| PDB=2d7y | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d7y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d7y OCA], [https://pdbe.org/2d7y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d7y RCSB], [https://www.ebi.ac.uk/pdbsum/2d7y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d7y ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AAT_ECOLI AAT_ECOLI]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d7/2d7y_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d7y ConSurf].
 +
<div style="clear:both"></div>
-
===Aspartate Aminotransferase Mutant MA===
+
==See Also==
-
 
+
*[[Aspartate aminotransferase 3D structures|Aspartate aminotransferase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2D7Y is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D7Y OCA].
+
-
[[Category: Aspartate transaminase]]
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Kuramitsu, S.]]
+
[[Category: Large Structures]]
-
[[Category: Masui, R.]]
+
[[Category: Kuramitsu S]]
-
[[Category: Nakagawa, N.]]
+
[[Category: Masui R]]
-
[[Category: Tada, H.]]
+
[[Category: Nakagawa N]]
-
[[Category: Tanaka, Y.]]
+
[[Category: Tada H]]
-
[[Category: Yano, T.]]
+
[[Category: Tanaka Y]]
-
[[Category: Aspartate aminotransferase]]
+
[[Category: Yano T]]
-
[[Category: Directed evolution]]
+
-
[[Category: Protein design]]
+
-
[[Category: Protein enginnering]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 08:06:48 2009''
+

Current revision

Aspartate Aminotransferase Mutant MA

PDB ID 2d7y

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools