This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1tbw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:38, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1tbw.png|left|200px]]
 
-
<!--
+
==Ligand Induced Conformational Shift in the N-terminal Domain of GRP94, Open Conformation==
-
The line below this paragraph, containing "STRUCTURE_1tbw", creates the "Structure Box" on the page.
+
<StructureSection load='1tbw' size='340' side='right'caption='[[1tbw]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1tbw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Canis_lupus_familiaris Canis lupus familiaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TBW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TBW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
-
{{STRUCTURE_1tbw| PDB=1tbw | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tbw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tbw OCA], [https://pdbe.org/1tbw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tbw RCSB], [https://www.ebi.ac.uk/pdbsum/1tbw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tbw ProSAT]</span></td></tr>
-
 
+
</table>
-
===Ligand Induced Conformational Shift in the N-terminal Domain of GRP94, Open Conformation===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/ENPL_CANLF ENPL_CANLF] Molecular chaperone that functions in the processing and transport of secreted proteins. When associated with CNPY3, required for proper folding of Toll-like receptors. Functions in endoplasmic reticulum associated degradation (ERAD). Has ATPase activity (By similarity).
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_15292259}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 15292259 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tb/1tbw_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_15292259}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1TBW is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Canis_lupus_familiaris Canis lupus familiaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TBW OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tbw ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:15292259</ref><references group="xtra"/>
+
</StructureSection>
[[Category: Canis lupus familiaris]]
[[Category: Canis lupus familiaris]]
-
[[Category: Dollins, D E.]]
+
[[Category: Large Structures]]
-
[[Category: Gewirth, D T.]]
+
[[Category: Dollins DE]]
-
[[Category: Immormino, R M.]]
+
[[Category: Gewirth DT]]
-
[[Category: Shaffer, P L.]]
+
[[Category: Immormino RM]]
-
[[Category: Soldano, K L.]]
+
[[Category: Shaffer PL]]
-
[[Category: Walker, M A.]]
+
[[Category: Soldano KL]]
-
[[Category: Amp]]
+
[[Category: Walker MA]]
-
[[Category: Bergrat]]
+
-
[[Category: Chaperone]]
+
-
[[Category: Endoplasmic reticulum]]
+
-
[[Category: Grp94]]
+
-
[[Category: Hsp90]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 08:28:18 2009''
+

Current revision

Ligand Induced Conformational Shift in the N-terminal Domain of GRP94, Open Conformation

PDB ID 1tbw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools