1lm7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:34, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1lm7.png|left|200px]]
 
-
<!--
+
==Structures of two intermediate filament-binding fragments of desmoplakin reveal a unique repeat motif structure==
-
The line below this paragraph, containing "STRUCTURE_1lm7", creates the "Structure Box" on the page.
+
<StructureSection load='1lm7' size='340' side='right'caption='[[1lm7]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1lm7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LM7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LM7 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lm7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lm7 OCA], [https://pdbe.org/1lm7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lm7 RCSB], [https://www.ebi.ac.uk/pdbsum/1lm7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lm7 ProSAT]</span></td></tr>
-
{{STRUCTURE_1lm7| PDB=1lm7 | SCENE= }}
+
</table>
-
 
+
== Disease ==
-
===Structures of two intermediate filament-binding fragments of desmoplakin reveal a unique repeat motif structure===
+
[https://www.uniprot.org/uniprot/DESP_HUMAN DESP_HUMAN] Defects in DSP are the cause of palmoplantar keratoderma striate type 2 (SPPK2) [MIM:[https://omim.org/entry/612908 612908]; also known as keratosis palmoplantaris striata II. SPPK2 is characterized by skin thickening in the palms (linear pattern) and the soles (island-like pattern) and flexor aspect of the fingers. Abnormalities of the nails, the teeth and the hair are rarely present.<ref>PMID:9887343</ref> Defects in DSP are the cause of cardiomyopathy dilated with woolly hair and keratoderma (DCWHK) [MIM:[https://omim.org/entry/605676 605676]; also known as Carvajal syndrome or palmoplantar keratoderma with left ventricular cardiomyopathy and woolly hair. DCWHK is an autosomal recessive cardiocutaneous syndrome characterized by a generalized striate keratoderma particularly affecting the palmoplantar epidermis, woolly hair, and dilated left ventricular cardiomyopathy.<ref>PMID:11063735</ref> Defects in DSP are the cause of familial arrhythmogenic right ventricular dysplasia type 8 (ARVD8) [MIM:[https://omim.org/entry/607450 607450]; also known as arrhythmogenic right ventricular cardiomyopathy 8 (ARVC8). ARVD is an autosomal dominant disease characterized by partial degeneration of the myocardium of the right ventricle, electrical instability, and sudden death. It is clinically defined by electrocardiographic and angiographic criteria; pathologic findings, replacement of ventricular myocardium with fatty and fibrous elements, preferentially involve the right ventricular free wall.<ref>PMID:12373648</ref> <ref>PMID:15941723</ref> <ref>PMID:20031617</ref> Defects in DSP are the cause of skin fragility-woolly hair syndrome (SFWHS) [MIM:[https://omim.org/entry/607655 607655]. SFWHS is an autosomal recessive genodermatosis characterized by focal and diffuse palmoplantar keratoderma, hyperkeratotic plaques on the trunk and limbs, and woolly hair with varying degrees of alopecia.<ref>PMID:11841538</ref> Defects in DSP are the cause of epidermolysis bullosa lethal acantholytic (EBLA) [MIM:[https://omim.org/entry/609638 609638]. EBLA is characterized by severe fragility of skin and mucous membranes. The phenotype is lethal in the neonatal period because of immense transcutaneous fluid loss. Typical features include universal alopecia, neonatal teeth, and nail loss. Histopathology of the skin shows suprabasal clefting and acantholysis throughout the spinous layer, mimicking pemphigus.
-
 
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/DESP_HUMAN DESP_HUMAN] Major high molecular weight protein of desmosomes. Involved in the organization of the desmosomal cadherin-plakoglobin complexes into discrete plasma membrane domains and in the anchoring of intermediate filaments to the desmosomes.
-
<!--
+
== Evolutionary Conservation ==
-
The line below this paragraph, {{ABSTRACT_PUBMED_12101406}}, adds the Publication Abstract to the page
+
[[Image:Consurf_key_small.gif|200px|right]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 12101406 is the PubMed ID number.
+
Check<jmol>
-
-->
+
<jmolCheckbox>
-
{{ABSTRACT_PUBMED_12101406}}
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lm/1lm7_consurf.spt"</scriptWhenChecked>
-
 
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
==About this Structure==
+
<text>to colour the structure by Evolutionary Conservation</text>
-
1LM7 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LM7 OCA].
+
</jmolCheckbox>
-
 
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lm7 ConSurf].
-
==Reference==
+
<div style="clear:both"></div>
-
<ref group="xtra">PMID:12101406</ref><references group="xtra"/>
+
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Choi, H J.]]
+
[[Category: Large Structures]]
-
[[Category: Green, K J.]]
+
[[Category: Choi HJ]]
-
[[Category: Park-Snyder, S.]]
+
[[Category: Green KJ]]
-
[[Category: Pascoe, L T.]]
+
[[Category: Park-Snyder S]]
-
[[Category: Weis, W I.]]
+
[[Category: Pascoe LT]]
-
[[Category: Plakin repeat]]
+
[[Category: Weis WI]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 08:55:54 2009''
+

Current revision

Structures of two intermediate filament-binding fragments of desmoplakin reveal a unique repeat motif structure

PDB ID 1lm7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools