2bdr

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(New page: 200px<br /><applet load="2bdr" size="450" color="white" frame="true" align="right" spinBox="true" caption="2bdr, resolution 1.60&Aring;" /> '''Crystal Structure of...)
Current revision (05:06, 17 October 2024) (edit) (undo)
 
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[[Image:2bdr.gif|left|200px]]<br /><applet load="2bdr" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="2bdr, resolution 1.60&Aring;" />
 
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'''Crystal Structure of the Putative Ureidoglycolate hydrolase PP4288 from Pseudomonas putida, Northeast Structural Genomics Target PpR49'''<br />
 
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==About this Structure==
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==Crystal Structure of the Putative Ureidoglycolate hydrolase PP4288 from Pseudomonas putida, Northeast Structural Genomics Target PpR49==
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2BDR is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida] with NA as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Ureidoglycolate_hydrolase Ureidoglycolate hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.19 3.5.3.19] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2BDR OCA].
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<StructureSection load='2bdr' size='340' side='right'caption='[[2bdr]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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[[Category: Pseudomonas putida]]
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== Structural highlights ==
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[[Category: Single protein]]
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<table><tr><td colspan='2'>[[2bdr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida_KT2440 Pseudomonas putida KT2440]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BDR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BDR FirstGlance]. <br>
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[[Category: Ureidoglycolate hydrolase]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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[[Category: Abashidze, M.]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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[[Category: Acton, T.B.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bdr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bdr OCA], [https://pdbe.org/2bdr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bdr RCSB], [https://www.ebi.ac.uk/pdbsum/2bdr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bdr ProSAT], [https://www.topsan.org/Proteins/NESGC/2bdr TOPSAN]</span></td></tr>
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[[Category: Conover, K.]]
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</table>
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[[Category: Forouhar, F.]]
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== Function ==
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[[Category: Ho, C.K.]]
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[https://www.uniprot.org/uniprot/ALLA_PSEPK ALLA_PSEPK] Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source (By similarity).[HAMAP-Rule:MF_00616]
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[[Category: Hunt, J.F.]]
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== Evolutionary Conservation ==
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[[Category: Jayaraman, S.]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: Montelione, G.T.]]
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Check<jmol>
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[[Category: NESG, Northeast.Structural.Genomics.Consortium.]]
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<jmolCheckbox>
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[[Category: Tong, L.]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/2bdr_consurf.spt"</scriptWhenChecked>
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[[Category: NA]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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[[Category: all beta protein]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: nesg]]
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</jmolCheckbox>
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[[Category: northeast structural genomics consortium]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bdr ConSurf].
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[[Category: protein structure initiative]]
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<div style="clear:both"></div>
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[[Category: psi]]
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__TOC__
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[[Category: structural genomics]]
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</StructureSection>
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[[Category: Large Structures]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 08:45:01 2007''
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[[Category: Pseudomonas putida KT2440]]
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[[Category: Abashidze M]]
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[[Category: Acton TB]]
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[[Category: Conover K]]
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[[Category: Forouhar F]]
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[[Category: Ho CK]]
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[[Category: Hunt JF]]
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[[Category: Jayaraman S]]
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[[Category: Montelione GT]]
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[[Category: Tong L]]

Current revision

Crystal Structure of the Putative Ureidoglycolate hydrolase PP4288 from Pseudomonas putida, Northeast Structural Genomics Target PpR49

PDB ID 2bdr

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