This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1kj5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:00, 3 April 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1kj5.png|left|200px]]
 
-
<!--
+
==Solution Structure of Human beta-defensin 1==
-
The line below this paragraph, containing "STRUCTURE_1kj5", creates the "Structure Box" on the page.
+
<StructureSection load='1kj5' size='340' side='right'caption='[[1kj5]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1kj5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KJ5 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kj5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kj5 OCA], [https://pdbe.org/1kj5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kj5 RCSB], [https://www.ebi.ac.uk/pdbsum/1kj5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kj5 ProSAT]</span></td></tr>
-
{{STRUCTURE_1kj5| PDB=1kj5 | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DEFB1_HUMAN DEFB1_HUMAN] Has bactericidal activity (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kj/1kj5_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kj5 ConSurf].
 +
<div style="clear:both"></div>
-
===Solution Structure of Human beta-defensin 1===
+
==See Also==
-
 
+
*[[Defensin 3D structures|Defensin 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_11741980}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 11741980 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_11741980}}
+
-
 
+
-
==About this Structure==
+
-
1KJ5 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJ5 OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:11741980</ref><references group="xtra"/>
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Aseyev, V.]]
+
[[Category: Large Structures]]
-
[[Category: Hunter, H N.]]
+
[[Category: Aseyev V]]
-
[[Category: Jr., P B.McCray.]]
+
[[Category: Hunter HN]]
-
[[Category: Schibli, D J.]]
+
[[Category: McCray Jr PB]]
-
[[Category: Starner, T D.]]
+
[[Category: Schibli DJ]]
-
[[Category: Tack, B F.]]
+
[[Category: Starner TD]]
-
[[Category: Vogel, H J.]]
+
[[Category: Tack BF]]
-
[[Category: Wiencek, J M.]]
+
[[Category: Vogel HJ]]
-
[[Category: Antimicrobial protein]]
+
[[Category: Wiencek JM]]
-
[[Category: Beta-defensin]]
+
-
[[Category: Defensin]]
+
-
[[Category: Hbd1]]
+
-
[[Category: Human beta-defensin 1]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 09:19:28 2009''
+

Current revision

Solution Structure of Human beta-defensin 1

PDB ID 1kj5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools