2o3b

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{{Seed}}
 
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[[Image:2o3b.png|left|200px]]
 
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==Crystal structure complex of Nuclease A (NucA) with intra-cellular inhibitor NuiA==
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The line below this paragraph, containing "STRUCTURE_2o3b", creates the "Structure Box" on the page.
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<StructureSection load='2o3b' size='340' side='right'caption='[[2o3b]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2o3b]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Nostoc_sp._PCC_7120_=_FACHB-418 Nostoc sp. PCC 7120 = FACHB-418]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O3B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O3B FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
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{{STRUCTURE_2o3b| PDB=2o3b | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o3b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o3b OCA], [https://pdbe.org/2o3b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o3b RCSB], [https://www.ebi.ac.uk/pdbsum/2o3b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o3b ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/NUCA_NOSS1 NUCA_NOSS1] Catalyzes the degradation of both RNA and DNA; has the potential to act as an endonuclease.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o3/2o3b_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o3b ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Nonspecific, extracellular nucleases have received enhanced attention recently as a consequence of the critical role that these enzymes can play in infectivity by overcoming the host neutrophil defense system. The activity of the cyanobacterial nuclease NucA, a member of the betabetaalpha Me superfamily, is controlled by the specific nuclease inhibitor, NuiA. Here we report the 2.3-A resolution crystal structure of the NucA-NuiA complex, showing that NucA inhibition by NuiA involves an unusual divalent metal ion bridge that connects the nuclease with its inhibitor. The C-terminal Thr-135(NuiA) hydroxyl oxygen is directly coordinated with the catalytic Mg(2+) of the nuclease active site, and Glu-24(NuiA) also extends into the active site, mimicking the charge of a scissile phosphate. NuiA residues Asp-75 and Trp-76 form a second interaction site, contributing to the strength and specificity of the interaction. The crystallographically defined interface is shown to be consistent with results of studies using site-directed NuiA mutants. This mode of inhibition differs dramatically from the exosite mechanism of inhibition seen with the DNase colicins E7/E9 and from other nuclease-inhibitor complexes that have been studied. The structure of this complex provides valuable insights for the development of inhibitors for related nonspecific nucleases that share the DRGH active site motif such as the Streptococcus pneumoniae nuclease EndA, which mediates infectivity of this pathogen, and mitochondrial EndoG, which is involved in recombination and apoptosis.
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===Crystal structure complex of Nuclease A (NucA) with intra-cellular inhibitor NuiA===
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The nuclease a-inhibitor complex is characterized by a novel metal ion bridge.,Ghosh M, Meiss G, Pingoud AM, London RE, Pedersen LC J Biol Chem. 2007 Feb 23;282(8):5682-90. Epub 2006 Nov 30. PMID:17138564<ref>PMID:17138564</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_17138564}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2o3b" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 17138564 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_17138564}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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2O3B is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Anabaena_sp. Anabaena sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O3B OCA].
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[[Category: Nostoc sp. PCC 7120 = FACHB-418]]
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[[Category: Ghosh M]]
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==Reference==
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[[Category: London RE]]
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<ref group="xtra">PMID:17138564</ref><references group="xtra"/>
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[[Category: Meiss G]]
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[[Category: Anabaena sp.]]
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[[Category: Pedersen LC]]
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[[Category: Ghosh, M.]]
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[[Category: Pingoud AM]]
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[[Category: London, R E.]]
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[[Category: Meiss, G.]]
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[[Category: Pedersen, L C.]]
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[[Category: Pingoud, A M.]]
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[[Category: Metal complex]]
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[[Category: Non-specific nuclease]]
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[[Category: Nuclease]]
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[[Category: Nuclease inhibitor]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 09:21:08 2009''
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Current revision

Crystal structure complex of Nuclease A (NucA) with intra-cellular inhibitor NuiA

PDB ID 2o3b

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